Magnesium in PDB 8pvv: Archaeoglobus Fulgidus Afago Complex with Afago-N Protein (Fafago) Bound with 30 Nt Rna Guide and 51 Nt Dna Target

The binding sites of Magnesium atom in the Archaeoglobus Fulgidus Afago Complex with Afago-N Protein (Fafago) Bound with 30 Nt Rna Guide and 51 Nt Dna Target (pdb code 8pvv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Archaeoglobus Fulgidus Afago Complex with Afago-N Protein (Fafago) Bound with 30 Nt Rna Guide and 51 Nt Dna Target, PDB code: 8pvv:

Magnesium binding site 1 out of 1 in the Archaeoglobus Fulgidus Afago Complex with Afago-N Protein (Fafago) Bound with 30 Nt Rna Guide and 51 Nt Dna Target


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Archaeoglobus Fulgidus Afago Complex with Afago-N Protein (Fafago) Bound with 30 Nt Rna Guide and 51 Nt Dna Target within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg101 b:39.5 occ:1.00 OP1 R:A1 1.7 43.7 1.0 NE2 A:GLN159 2.0 38.0 1.0 O A:LEU427 2.3 38.4 1.0 OP1 R:G3 2.5 38.5 1.0 OXT A:LEU427 2.8 38.4 1.0 C A:LEU427 2.9 38.4 1.0 P R:A1 3.1 43.7 1.0 CD A:GLN159 3.3 38.0 1.0 NH1 A:ARG380 3.5 32.2 1.0 O5' R:A1 3.7 43.7 1.0 O A:HOH501 3.7 35.4 1.0 C5' R:A1 3.7 43.7 1.0 OP3 R:A1 3.9 43.7 1.0 P R:G3 3.9 38.5 1.0 OE1 A:GLN159 4.0 38.0 1.0 NZ A:LYS127 4.2 47.7 1.0 OP2 R:A1 4.2 43.7 1.0 NZ A:LYS163 4.3 35.5 1.0 NE A:ARG380 4.3 32.2 1.0 CZ A:ARG380 4.3 32.2 1.0 CG A:GLN159 4.4 38.0 1.0 CA A:LEU427 4.4 38.4 1.0 O3' R:G2 4.4 39.6 1.0 O A:PHE426 4.4 34.7 1.0 CE A:LYS163 4.6 35.5 1.0 O5' R:G3 4.6 38.5 1.0 N A:LEU427 4.9 38.4 1.0 C A:PHE426 5.0 34.7 1.0 OH A:TYR123 5.0 45.9 1.0 NE2 A:GLN137 5.0 36.1 1.0 OP2 R:G3 5.0 38.5 1.0

E.Manakova, E.Golovinas, R.Poceviciute, G.Sasnauskas, A.Silanskas, D.Rutkauskas, M.Jankunec, E.Zagorskaite, E.Jurgelaitis, A.Grybauskas, C.Venclovas, M.Zaremba. The Missing Part: the Archaeoglobus Fulgidus Argonaute Forms A Functional Heterodimer with An N-L1-L2 Domain Protein. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 38197228
DOI: 10.1093/NAR/GKAD1241