Magnesium in PDB 8q3n: Bacterial Transcription Termination Factor Rho + Adp

The binding sites of Magnesium atom in the Bacterial Transcription Termination Factor Rho + Adp (pdb code 8q3n). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Bacterial Transcription Termination Factor Rho + Adp, PDB code: 8q3n:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Bacterial Transcription Termination Factor Rho + Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bacterial Transcription Termination Factor Rho + Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1001 b:77.9 occ:1.00 O1B B:ADP1000 2.0 75.2 1.0 OG1 B:THR185 2.1 90.8 1.0 PB B:ADP1000 3.2 80.7 1.0 CB B:THR185 3.4 85.5 1.0 O2B B:ADP1000 3.6 75.4 1.0 O2A B:ADP1000 3.9 75.1 1.0 CG2 B:THR185 4.2 80.9 1.0 O3B B:ADP1000 4.2 78.0 1.0 O3A B:ADP1000 4.3 70.0 1.0 NH2 B:ARG212 4.4 86.5 1.0 N B:THR185 4.4 76.3 1.0 CA B:THR185 4.4 75.4 1.0 OE2 B:GLU211 4.4 105.9 1.0 CG B:LYS184 4.6 84.7 1.0 PA B:ADP1000 4.6 63.0 1.0 OE1 B:GLU215 4.7 109.3 1.0 NH1 A:ARG366 4.7 62.9 1.0 OE1 B:GLU211 4.8 105.0 1.0 OE2 B:GLU215 4.8 109.7 1.0 CD B:GLU215 4.9 108.7 1.0

Magnesium binding site 2 out of 4 in the Bacterial Transcription Termination Factor Rho + Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bacterial Transcription Termination Factor Rho + Adp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1001 b:68.9 occ:1.00 O2B C:ADP1000 2.0 84.0 1.0 OG1 C:THR185 2.1 83.8 1.0 PB C:ADP1000 3.3 85.8 1.0 CB C:THR185 3.4 77.5 1.0 O1B C:ADP1000 3.7 87.3 1.0 NH2 C:ARG212 3.9 84.5 1.0 CG2 C:THR185 4.2 76.5 1.0 O3B C:ADP1000 4.2 85.5 1.0 O3A C:ADP1000 4.4 79.6 1.0 CA C:THR185 4.4 66.4 1.0 N C:THR185 4.4 73.5 1.0 O1A C:ADP1000 4.4 92.8 1.0 CG C:LYS184 4.6 80.8 1.0 OE1 C:GLU211 4.6 97.7 1.0 NH1 B:ARG366 4.7 80.6 1.0 OE2 C:GLU211 4.8 98.7 1.0 PA C:ADP1000 4.8 81.1 1.0 OE2 C:GLU215 4.8 98.7 1.0 OE1 C:GLU215 4.8 96.0 1.0 CD C:GLU215 4.9 97.3 1.0 NZ C:LYS184 4.9 85.0 1.0 CZ C:ARG212 4.9 78.4 1.0

Magnesium binding site 3 out of 4 in the Bacterial Transcription Termination Factor Rho + Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bacterial Transcription Termination Factor Rho + Adp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1001 b:67.8 occ:1.00 O2B D:ADP1000 2.0 90.2 1.0 OG1 D:THR185 2.1 87.2 1.0 CB D:THR185 3.4 83.3 1.0 PB D:ADP1000 3.4 99.8 1.0 O1B D:ADP1000 4.0 94.8 1.0 NH2 D:ARG212 4.1 82.2 1.0 CG2 D:THR185 4.1 78.2 1.0 OE2 D:GLU211 4.3 101.9 1.0 O3A D:ADP1000 4.3 90.2 1.0 O1A D:ADP1000 4.3 101.1 1.0 O3B D:ADP1000 4.4 96.3 1.0 CA D:THR185 4.4 73.0 1.0 N D:THR185 4.5 73.2 1.0 OE2 D:GLU215 4.5 102.7 1.0 NH1 C:ARG366 4.6 83.4 1.0 OE1 D:GLU215 4.7 102.2 1.0 CG D:LYS184 4.7 80.1 1.0 CD D:GLU215 4.7 102.6 1.0 PA D:ADP1000 4.7 87.1 1.0 O2A D:ADP1000 4.9 88.8 1.0 CZ D:ARG212 5.0 76.6 1.0

Magnesium binding site 4 out of 4 in the Bacterial Transcription Termination Factor Rho + Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bacterial Transcription Termination Factor Rho + Adp within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1001 b:70.4 occ:1.00 O3B E:ADP1000 2.0 124.0 1.0 OG1 E:THR185 2.1 92.4 1.0 PB E:ADP1000 3.1 127.7 1.0 O1B E:ADP1000 3.3 124.7 1.0 CB E:THR185 3.4 88.4 1.0 O1A E:ADP1000 3.9 128.6 1.0 O2B E:ADP1000 4.0 125.8 1.0 NH2 E:ARG212 4.1 79.8 1.0 CG2 E:THR185 4.2 81.1 1.0 O3A E:ADP1000 4.3 123.5 1.0 N E:THR185 4.4 82.1 1.0 CA E:THR185 4.4 81.4 1.0 PA E:ADP1000 4.5 122.1 1.0 CG E:LYS184 4.5 84.1 1.0 NH2 D:ARG366 4.6 97.3 1.0 OE2 E:GLU215 4.6 93.7 1.0 NZ E:LYS184 4.7 89.3 1.0 OE2 E:GLU211 4.8 98.4 1.0 CD E:GLU215 4.9 98.2 1.0 O2A E:ADP1000 4.9 121.4 1.0 OE1 E:GLU215 5.0 102.3 1.0 OE1 E:GLU211 5.0 94.8 1.0

B.Wang, N.Said, T.Hilal, M.Finazzo, M.C.Wahl, I.Artsimovitch. Transcription Termination Factor Rho Polymerizes Under Stress. Biorxiv 2023.
ISSN: ISSN 2692-8205
PubMed: 37645988
DOI: 10.1101/2023.08.18.553922