Magnesium in PDB 8q3q: Bacterial Transcription Termination Factor Rho G152D Mutant

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Magnesium atom in the Bacterial Transcription Termination Factor Rho G152D Mutant (pdb code 8q3q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 18 binding sites of Magnesium where determined in the Bacterial Transcription Termination Factor Rho G152D Mutant, PDB code: 8q3q:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 18 in 8q3q

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Magnesium binding site 1 out of 18 in the Bacterial Transcription Termination Factor Rho G152D Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bacterial Transcription Termination Factor Rho G152D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg1001

b:160.8
occ:1.00
 O2B a:ADP1000 2.1 156.0 1.0
CG2 a:THR185 2.5 140.5 1.0
PB a:ADP1000 3.3 166.5 1.0
NZ a:LYS184 3.4 131.7 1.0
O1B a:ADP1000 3.7 158.5 1.0
CB a:THR185 4.0 137.9 1.0
O3B a:ADP1000 4.2 158.3 1.0
O1A a:ADP1000 4.3 145.1 1.0
CE a:LYS184 4.4 131.8 1.0
O3A a:ADP1000 4.4 152.0 1.0
OG1 a:THR185 4.5 140.0 1.0
O2A a:ADP1000 4.6 156.3 1.0
PA a:ADP1000 4.6 151.0 1.0
N a:THR185 4.8 134.4 1.0
OE1 a:GLU215 4.8 145.9 1.0
NH2 a:ARG212 4.8 136.8 1.0
CA a:THR185 4.9 136.6 1.0

Magnesium binding site 2 out of 18 in 8q3q

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Magnesium binding site 2 out of 18 in the Bacterial Transcription Termination Factor Rho G152D Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bacterial Transcription Termination Factor Rho G152D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
r:Mg1001

b:160.8
occ:1.00
 O2B r:ADP1000 2.1 156.0 1.0
CG2 r:THR185 2.5 140.5 1.0
PB r:ADP1000 3.3 166.5 1.0
NZ r:LYS184 3.4 131.7 1.0
O1B r:ADP1000 3.7 158.5 1.0
CB r:THR185 4.0 137.9 1.0
O3B r:ADP1000 4.2 158.3 1.0
O1A r:ADP1000 4.3 145.1 1.0
CE r:LYS184 4.4 131.8 1.0
O3A r:ADP1000 4.4 152.0 1.0
OG1 r:THR185 4.5 140.0 1.0
O2A r:ADP1000 4.6 156.3 1.0
PA r:ADP1000 4.6 151.0 1.0
N r:THR185 4.8 134.4 1.0
OE1 r:GLU215 4.8 145.9 1.0
NH2 r:ARG212 4.8 136.8 1.0
CA r:THR185 4.9 136.6 1.0

Magnesium binding site 3 out of 18 in 8q3q

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Magnesium binding site 3 out of 18 in the Bacterial Transcription Termination Factor Rho G152D Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bacterial Transcription Termination Factor Rho G152D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
q:Mg1001

b:160.8
occ:1.00
 O3B q:ADP1000 2.1 156.0 1.0
CG2 q:THR185 2.5 140.5 1.0
PB q:ADP1000 3.3 166.5 1.0
NZ q:LYS184 3.4 131.7 1.0
O2B q:ADP1000 3.7 158.5 1.0
CB q:THR185 4.0 137.9 1.0
O1B q:ADP1000 4.2 158.3 1.0
O1A q:ADP1000 4.3 145.1 1.0
CE q:LYS184 4.4 131.8 1.0
O3A q:ADP1000 4.4 152.0 1.0
OG1 q:THR185 4.5 140.0 1.0
O2A q:ADP1000 4.6 156.3 1.0
PA q:ADP1000 4.6 151.0 1.0
N q:THR185 4.8 134.4 1.0
OE1 q:GLU215 4.8 145.9 1.0
NH2 q:ARG212 4.8 136.8 1.0
CA q:THR185 4.9 136.6 1.0

Magnesium binding site 4 out of 18 in 8q3q

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Magnesium binding site 4 out of 18 in the Bacterial Transcription Termination Factor Rho G152D Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bacterial Transcription Termination Factor Rho G152D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
p:Mg1001

b:160.8
occ:1.00
 O3B p:ADP1000 2.1 156.0 1.0
CG2 p:THR185 2.5 140.5 1.0
PB p:ADP1000 3.3 166.5 1.0
NZ p:LYS184 3.4 131.7 1.0
O2B p:ADP1000 3.7 158.5 1.0
CB p:THR185 4.0 137.9 1.0
O1B p:ADP1000 4.2 158.3 1.0
O1A p:ADP1000 4.3 145.1 1.0
CE p:LYS184 4.4 131.8 1.0
O3A p:ADP1000 4.4 152.0 1.0
OG1 p:THR185 4.5 140.0 1.0
O2A p:ADP1000 4.6 156.3 1.0
PA p:ADP1000 4.6 151.0 1.0
N p:THR185 4.8 134.4 1.0
OE1 p:GLU215 4.8 145.9 1.0
NH2 p:ARG212 4.8 136.8 1.0
CA p:THR185 4.9 136.6 1.0

Magnesium binding site 5 out of 18 in 8q3q

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Magnesium binding site 5 out of 18 in the Bacterial Transcription Termination Factor Rho G152D Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bacterial Transcription Termination Factor Rho G152D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
o:Mg1001

b:160.8
occ:1.00
 O3B o:ADP1000 2.1 156.0 1.0
CG2 o:THR185 2.5 140.5 1.0
PB o:ADP1000 3.3 166.5 1.0
NZ o:LYS184 3.4 131.7 1.0
O2B o:ADP1000 3.7 158.5 1.0
CB o:THR185 4.0 137.9 1.0
O1B o:ADP1000 4.2 158.3 1.0
O1A o:ADP1000 4.3 145.1 1.0
CE o:LYS184 4.4 131.8 1.0
O3A o:ADP1000 4.4 152.0 1.0
OG1 o:THR185 4.5 140.0 1.0
O2A o:ADP1000 4.6 156.3 1.0
PA o:ADP1000 4.6 151.0 1.0
N o:THR185 4.8 134.4 1.0
OE1 o:GLU215 4.8 145.9 1.0
NH2 o:ARG212 4.8 136.8 1.0
CA o:THR185 4.9 136.6 1.0

Magnesium binding site 6 out of 18 in 8q3q

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Magnesium binding site 6 out of 18 in the Bacterial Transcription Termination Factor Rho G152D Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Bacterial Transcription Termination Factor Rho G152D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
n:Mg1001

b:160.8
occ:1.00
 O3B n:ADP1000 2.1 156.0 1.0
CG2 n:THR185 2.5 140.5 1.0
PB n:ADP1000 3.3 166.5 1.0
NZ n:LYS184 3.4 131.7 1.0
O2B n:ADP1000 3.7 158.5 1.0
CB n:THR185 4.0 137.9 1.0
O1B n:ADP1000 4.2 158.3 1.0
O1A n:ADP1000 4.3 145.1 1.0
CE n:LYS184 4.4 131.8 1.0
O3A n:ADP1000 4.4 152.0 1.0
OG1 n:THR185 4.5 140.0 1.0
O2A n:ADP1000 4.6 156.3 1.0
PA n:ADP1000 4.6 151.0 1.0
N n:THR185 4.8 134.4 1.0
OE1 n:GLU215 4.8 145.9 1.0
NH2 n:ARG212 4.8 136.8 1.0
CA n:THR185 4.9 136.6 1.0

Magnesium binding site 7 out of 18 in 8q3q

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Magnesium binding site 7 out of 18 in the Bacterial Transcription Termination Factor Rho G152D Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Bacterial Transcription Termination Factor Rho G152D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
m:Mg1001

b:160.8
occ:1.00
 O2B m:ADP1000 2.1 156.0 1.0
CG2 m:THR185 2.5 140.5 1.0
PB m:ADP1000 3.3 166.5 1.0
NZ m:LYS184 3.4 131.7 1.0
O1B m:ADP1000 3.7 158.5 1.0
CB m:THR185 4.0 137.9 1.0
O3B m:ADP1000 4.2 158.3 1.0
O1A m:ADP1000 4.3 145.1 1.0
CE m:LYS184 4.4 131.8 1.0
O3A m:ADP1000 4.4 152.0 1.0
OG1 m:THR185 4.5 140.0 1.0
O2A m:ADP1000 4.6 156.3 1.0
PA m:ADP1000 4.6 151.0 1.0
N m:THR185 4.8 134.4 1.0
OE1 m:GLU215 4.8 145.9 1.0
NH2 m:ARG212 4.8 136.8 1.0
CA m:THR185 4.9 136.6 1.0

Magnesium binding site 8 out of 18 in 8q3q

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Magnesium binding site 8 out of 18 in the Bacterial Transcription Termination Factor Rho G152D Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Bacterial Transcription Termination Factor Rho G152D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
l:Mg1001

b:160.8
occ:1.00
 O2B l:ADP1000 2.1 156.0 1.0
CG2 l:THR185 2.5 140.5 1.0
PB l:ADP1000 3.3 166.5 1.0
NZ l:LYS184 3.4 131.7 1.0
O1B l:ADP1000 3.7 158.5 1.0
CB l:THR185 4.0 137.9 1.0
O3B l:ADP1000 4.2 158.3 1.0
O1A l:ADP1000 4.3 145.1 1.0
CE l:LYS184 4.4 131.8 1.0
O3A l:ADP1000 4.4 152.0 1.0
OG1 l:THR185 4.5 140.0 1.0
O2A l:ADP1000 4.6 156.3 1.0
PA l:ADP1000 4.6 151.0 1.0
N l:THR185 4.8 134.4 1.0
OE1 l:GLU215 4.8 145.9 1.0
NH2 l:ARG212 4.8 136.8 1.0
CA l:THR185 4.9 136.6 1.0

Magnesium binding site 9 out of 18 in 8q3q

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Magnesium binding site 9 out of 18 in the Bacterial Transcription Termination Factor Rho G152D Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Bacterial Transcription Termination Factor Rho G152D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
k:Mg1001

b:160.8
occ:1.00
 O2B k:ADP1000 2.1 156.0 1.0
CG2 k:THR185 2.5 140.5 1.0
PB k:ADP1000 3.3 166.5 1.0
NZ k:LYS184 3.4 131.7 1.0
O1B k:ADP1000 3.7 158.5 1.0
CB k:THR185 4.0 137.9 1.0
O3B k:ADP1000 4.2 158.3 1.0
O1A k:ADP1000 4.3 145.1 1.0
CE k:LYS184 4.4 131.8 1.0
O3A k:ADP1000 4.4 152.0 1.0
OG1 k:THR185 4.5 140.0 1.0
O2A k:ADP1000 4.6 156.3 1.0
PA k:ADP1000 4.6 151.0 1.0
N k:THR185 4.8 134.4 1.0
OE1 k:GLU215 4.8 145.9 1.0
NH2 k:ARG212 4.8 136.8 1.0
CA k:THR185 4.9 136.6 1.0

Magnesium binding site 10 out of 18 in 8q3q

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Magnesium binding site 10 out of 18 in the Bacterial Transcription Termination Factor Rho G152D Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Bacterial Transcription Termination Factor Rho G152D Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
j:Mg1001

b:160.8
occ:1.00
 O2B j:ADP1000 2.1 156.0 1.0
CG2 j:THR185 2.5 140.5 1.0
PB j:ADP1000 3.3 166.5 1.0
NZ j:LYS184 3.4 131.7 1.0
O1B j:ADP1000 3.7 158.5 1.0
CB j:THR185 4.0 137.9 1.0
O3B j:ADP1000 4.2 158.3 1.0
O1A j:ADP1000 4.3 145.1 1.0
CE j:LYS184 4.4 131.8 1.0
O3A j:ADP1000 4.4 152.0 1.0
OG1 j:THR185 4.5 140.0 1.0
O2A j:ADP1000 4.6 156.3 1.0
PA j:ADP1000 4.6 151.0 1.0
N j:THR185 4.8 134.4 1.0
OE1 j:GLU215 4.8 145.9 1.0
NH2 j:ARG212 4.8 136.8 1.0
CA j:THR185 4.9 136.6 1.0

Reference:

B.Wang, N.Said, T.Hilal, M.Finazzo, M.C.Wahl, I.Artsimovitch. Transcription Termination Factor Rho Polymerizes Under Stress. Biorxiv 2023.
ISSN: ISSN 2692-8205
PubMed: 37645988
DOI: 10.1101/2023.08.18.553922
Page generated: Fri Oct 4 16:32:09 2024

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