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Magnesium in PDB 8qfr: Ergothioneine Dioxygenase From Thermocatellispora Tengchongensis in Complex with Nickel and Substrate (Anaerobic)

Protein crystallography data

The structure of Ergothioneine Dioxygenase From Thermocatellispora Tengchongensis in Complex with Nickel and Substrate (Anaerobic), PDB code: 8qfr was solved by C.M.Vasseur, F.P.Seebeck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.36 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.633, 59.088, 134.446, 90, 90, 90
R / Rfree (%) 17.9 / 22

Other elements in 8qfr:

The structure of Ergothioneine Dioxygenase From Thermocatellispora Tengchongensis in Complex with Nickel and Substrate (Anaerobic) also contains other interesting chemical elements:

Nickel (Ni) 2 atoms
Calcium (Ca) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ergothioneine Dioxygenase From Thermocatellispora Tengchongensis in Complex with Nickel and Substrate (Anaerobic) (pdb code 8qfr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Ergothioneine Dioxygenase From Thermocatellispora Tengchongensis in Complex with Nickel and Substrate (Anaerobic), PDB code: 8qfr:

Magnesium binding site 1 out of 1 in 8qfr

Go back to Magnesium Binding Sites List in 8qfr
Magnesium binding site 1 out of 1 in the Ergothioneine Dioxygenase From Thermocatellispora Tengchongensis in Complex with Nickel and Substrate (Anaerobic)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ergothioneine Dioxygenase From Thermocatellispora Tengchongensis in Complex with Nickel and Substrate (Anaerobic) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:9.4
occ:1.00
OE1 A:GLU41 2.1 12.5 1.0
CD A:GLU41 3.1 13.2 1.0
OE2 A:GLU41 3.4 15.3 1.0
CE1 A:HIS45 4.1 15.3 1.0
CG A:GLU41 4.5 10.0 1.0
NE2 A:HIS45 4.5 17.3 1.0

Reference:

E.Nalivaiko, C.M.Vasseur, F.P.Seebeck. Ergothioneine Dioxygenase From Thermocatellispora Tengchongensis in Complex with Nickel and Substrate (Anaerobic) To Be Published.
Page generated: Fri Oct 4 16:44:14 2024

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