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Magnesium in PDB 8qmv: L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos
Enzymatic activity of L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos
All present enzymatic activity of L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos:
4.1.1.39;
4.1.1.39;
Protein crystallography data
The structure of L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos, PDB code: 8qmv
was solved by
J.Zarzycki,
L.Schulz,
T.J.Erb,
G.K.A.Hochberg,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 24.97 / 1.85 |
| Space group | C 2 2 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 121.79, 203.8, 147.37, 90, 90, 90 |
| R / Rfree (%) | 16.1 / 17.4 |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos
(pdb code 8qmv). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos, PDB code: 8qmv:
Jump to Magnesium binding site number: 1; 2; 3; 4;
In total 4 binding sites of Magnesium where determined in the L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos, PDB code: 8qmv:
Jump to Magnesium binding site number: 1; 2; 3; 4;
Magnesium binding site 1 out of 4 in 8qmv
Go back to
Magnesium Binding Sites List in 8qmv
Magnesium binding site 1 out
of 4 in the L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos within 5.0Å range:
|
Magnesium binding site 2 out of 4 in 8qmv
Go back to
Magnesium Binding Sites List in 8qmv
Magnesium binding site 2 out
of 4 in the L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos within 5.0Å range:
|
Magnesium binding site 3 out of 4 in 8qmv
Go back to
Magnesium Binding Sites List in 8qmv
Magnesium binding site 3 out
of 4 in the L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos within 5.0Å range:
|
Magnesium binding site 4 out of 4 in 8qmv
Go back to
Magnesium Binding Sites List in 8qmv
Magnesium binding site 4 out
of 4 in the L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of L2 Forming Rubisco Derived From Ancestral Sequence Reconstruction of the Last Common Ancestor of Form I'' and Form I Rubiscos within 5.0Å range:
|
Reference:
L.Schulz,
J.Zarzycki,
W.Steinchen,
G.K.A.Hochberg,
T.J.Erb.
Layered Entrenchment Maintains Essentiality in the Evolution of Form I Rubisco Complexes Biorxiv 2024.
ISSN: ISSN 2692-8205
DOI: 10.1101/2024.01.18.576253
Page generated: Thu Oct 31 21:59:11 2024
ISSN: ISSN 2692-8205
DOI: 10.1101/2024.01.18.576253
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