Magnesium in PDB 8qqj: Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 31;

Binding sites:

The binding sites of Magnesium atom in the Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus (pdb code 8qqj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 31 binding sites of Magnesium where determined in the Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus, PDB code: 8qqj:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 31 in the Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg201 b:125.7 occ:1.00 O J:VAL110 2.8 77.5 1.0 O J:ALA90 3.1 94.2 1.0 OD1 J:ASP93 3.1 91.7 1.0 C J:VAL110 3.8 75.7 1.0 CB J:ASN111 3.9 92.6 1.0 CG J:ASP93 4.1 91.5 1.0 CA J:ASN111 4.2 92.4 1.0 C J:ALA90 4.3 93.9 1.0 OD2 J:ASP93 4.3 94.7 1.0 N J:ASN111 4.5 82.2 1.0 N J:VAL110 4.7 69.5 1.0 CA J:VAL110 5.0 71.9 1.0

Magnesium binding site 2 out of 31 in the Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:214.4 occ:1.00 O A:ALA90 3.4 218.9 1.0 O A:VAL110 3.5 211.1 1.0 OD1 A:ASP93 3.6 200.8 1.0 CB A:ASN111 4.3 235.6 1.0 CG A:ASP93 4.4 201.0 1.0 OD2 A:ASP93 4.5 203.0 1.0 C A:ALA90 4.5 219.2 1.0 C A:VAL110 4.6 210.6 1.0 CA A:ASN111 4.7 231.9 1.0 CA A:SER91 5.0 223.1 1.0

Magnesium binding site 3 out of 31 in the Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg201 b:219.4 occ:1.00 O B:ALA90 3.4 187.9 1.0 O B:VAL110 3.5 175.6 1.0 OD1 B:ASP93 3.6 176.5 1.0 CB B:ASN111 4.2 199.4 1.0 CG B:ASP93 4.5 176.8 1.0 OD2 B:ASP93 4.5 179.5 1.0 C B:VAL110 4.5 174.5 1.0 C B:ALA90 4.5 188.3 1.0 CA B:ASN111 4.6 195.9 1.0 CA B:SER91 5.0 194.1 1.0

Magnesium binding site 4 out of 31 in the Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg201 b:205.1 occ:1.00 O C:VAL110 3.3 152.8 1.0 O C:ALA90 3.3 164.5 1.0 OD1 C:ASP93 3.6 154.8 1.0 CB C:ASN111 3.9 174.7 1.0 C C:VAL110 4.3 151.6 1.0 CA C:ASN111 4.4 171.7 1.0 C C:ALA90 4.4 164.7 1.0 CG C:ASP93 4.5 154.9 1.0 OD2 C:ASP93 4.7 157.9 1.0 N C:ASN111 4.8 161.3 1.0 CA C:SER91 5.0 170.8 1.0

Magnesium binding site 5 out of 31 in the Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg201 b:209.2 occ:1.00 O D:VAL110 3.1 132.0 1.0 O D:ALA90 3.4 148.1 1.0 OD1 D:ASP93 3.5 139.5 1.0 CB D:ASN111 3.8 152.1 1.0 C D:VAL110 4.1 130.7 1.0 CA D:ASN111 4.3 149.6 1.0 CG D:ASP93 4.4 139.5 1.0 C D:ALA90 4.5 148.2 1.0 OD2 D:ASP93 4.6 142.6 1.0 N D:ASN111 4.7 139.8 1.0 CG D:ASN111 4.9 153.2 1.0 ND2 D:ASN111 4.9 152.8 1.0

Magnesium binding site 6 out of 31 in the Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg201 b:191.1 occ:1.00 O E:VAL110 3.0 115.5 1.0 OD1 E:ASP93 3.3 126.3 1.0 O E:ALA90 3.4 136.7 1.0 CB E:ASN111 3.8 132.6 1.0 C E:VAL110 4.0 114.5 1.0 CG E:ASP93 4.3 126.2 1.0 CA E:ASN111 4.3 131.4 1.0 OD2 E:ASP93 4.4 129.4 1.0 N E:ASN111 4.6 122.5 1.0 C E:ALA90 4.6 137.0 1.0 ND2 E:ASN111 4.9 132.5 1.0 N E:VAL110 4.9 107.0 1.0 CG E:ASN111 4.9 133.0 1.0

Magnesium binding site 7 out of 31 in the Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg201 b:159.6 occ:1.00 O F:VAL110 2.8 104.2 1.0 OD1 F:ASP93 3.2 113.9 1.0 O F:ALA90 3.4 125.6 1.0 CB F:ASN111 3.8 123.7 1.0 C F:VAL110 3.8 103.0 1.0 CG F:ASP93 4.2 113.6 1.0 CA F:ASN111 4.2 122.3 1.0 OD2 F:ASP93 4.3 116.6 1.0 N F:ASN111 4.4 111.8 1.0 C F:ALA90 4.5 125.7 1.0 N F:VAL110 4.7 95.7 1.0 ND2 F:ASN111 4.8 124.2 1.0 CG F:ASN111 4.8 124.4 1.0 CA F:VAL110 4.9 98.5 1.0

Magnesium binding site 8 out of 31 in the Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg201 b:153.3 occ:1.00 O G:VAL110 2.8 96.1 1.0 OD1 G:ASP93 3.2 105.2 1.0 O G:ALA90 3.3 114.8 1.0 CB G:ASN111 3.9 114.7 1.0 C G:VAL110 3.9 94.5 1.0 CG G:ASP93 4.1 105.0 1.0 CA G:ASN111 4.2 113.5 1.0 OD2 G:ASP93 4.3 108.4 1.0 C G:ALA90 4.4 115.1 1.0 N G:ASN111 4.5 102.9 1.0 N G:VAL110 4.8 87.0 1.0 CG G:ASN111 5.0 115.5 1.0 ND2 G:ASN111 5.0 115.6 1.0

Magnesium binding site 9 out of 31 in the Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg201 b:138.9 occ:1.00 O H:VAL110 2.9 87.1 1.0 OD1 H:ASP93 3.2 97.5 1.0 O H:ALA90 3.2 105.2 1.0 CB H:ASN111 3.9 104.7 1.0 C H:VAL110 3.9 85.3 1.0 CG H:ASP93 4.1 97.4 1.0 OD2 H:ASP93 4.3 100.8 1.0 CA H:ASN111 4.3 104.0 1.0 C H:ALA90 4.4 105.2 1.0 N H:ASN111 4.6 93.2 1.0 N H:VAL110 4.8 78.7 1.0

Magnesium binding site 10 out of 31 in the Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryoem Structure of the Type IV Pilin PILA5 From Thermus Thermophilus within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg201 b:133.7 occ:1.00 O I:VAL110 2.8 82.1 1.0 OD1 I:ASP93 3.2 93.2 1.0 O I:ALA90 3.2 98.3 1.0 CB I:ASN111 3.9 99.0 1.0 C I:VAL110 3.9 80.0 1.0 CG I:ASP93 4.1 93.3 1.0 CA I:ASN111 4.2 98.3 1.0 OD2 I:ASP93 4.3 96.3 1.0 C I:ALA90 4.3 98.3 1.0 N I:ASN111 4.5 87.5 1.0 N I:VAL110 4.8 73.2 1.0 CG I:ASN111 5.0 100.0 1.0

V.A.M.Gold, A.Neuhaus, M.Gaines, M.Isupov, M.Mclaren. Cryoem Structure of the Type IV Pilin PILA4 From Thermus Thermophilus To Be Published.