Magnesium in PDB 8qz8: Tilapia Lake Virus Polymerase in Vrna Pre-Termination State (Transcriptase Conformation)

The structure of Tilapia Lake Virus Polymerase in Vrna Pre-Termination State (Transcriptase Conformation) also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

The binding sites of Magnesium atom in the Tilapia Lake Virus Polymerase in Vrna Pre-Termination State (Transcriptase Conformation) (pdb code 8qz8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Tilapia Lake Virus Polymerase in Vrna Pre-Termination State (Transcriptase Conformation), PDB code: 8qz8:

Magnesium binding site 1 out of 1 in the Tilapia Lake Virus Polymerase in Vrna Pre-Termination State (Transcriptase Conformation)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tilapia Lake Virus Polymerase in Vrna Pre-Termination State (Transcriptase Conformation) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:30.0 occ:1.00 OD1 B:ASP213 2.2 71.1 1.0 OD1 B:ASP290 2.5 66.7 1.0 O B:GLY212 3.2 63.4 1.0 CG B:ASP213 3.3 70.0 1.0 CG B:ASP290 3.4 64.4 1.0 HA B:ILE329 3.6 59.5 1.0 OE2 B:GLU328 3.6 70.8 1.0 OE1 B:GLU328 3.7 74.2 1.0 H B:ASN330 3.8 63.6 1.0 OD2 B:ASP213 3.8 70.7 1.0 HA B:ASP290 3.9 62.4 1.0 OD2 B:ASP290 3.9 69.4 1.0 CD B:GLU328 4.0 67.2 1.0 C B:GLY212 4.1 60.5 1.0 O B:GLU328 4.2 63.1 1.0 HG13 B:ILE329 4.4 60.1 1.0 HA B:ASP213 4.4 61.4 1.0 CB B:ASP290 4.4 56.4 1.0 HB3 B:ASP290 4.5 63.6 1.0 CA B:ILE329 4.5 55.0 1.0 N B:ASN330 4.5 66.5 1.0 CA B:ASP290 4.6 53.2 1.0 CB B:ASP213 4.6 60.5 1.0 H B:PHE291 4.6 60.0 1.0 H B:GLY212 4.6 57.5 1.0 N B:GLY212 4.7 51.0 1.0 N B:ASP213 4.7 54.0 1.0 CA B:ASP213 4.8 50.2 1.0 O B:PHE291 4.8 71.6 1.0 HB3 B:ASN211 4.8 57.9 1.0 H B:SER331 4.9 63.0 1.0 HD22 B:ASN330 4.9 63.0 1.0 HB3 B:ASP213 4.9 62.2 1.0 C B:GLU328 5.0 54.5 1.0 CA B:GLY212 5.0 57.1 1.0

B.Arragain, M.Pelosse, A.Thompson, S.Cusack. Structural and Functional Analysis of the Minimal Orthomyxovirus-Like Polymerase of Tilapia Lake Virus From the Highly Diverged Amnoonviridae Family. Nat Commun V. 14 8145 2023.
ISSN: ESSN 2041-1723
PubMed: 38066000
DOI: 10.1038/S41467-023-44044-X