Magnesium in PDB 8r1a: Model of the Membrane-Bound GBP1 Oligomer

The structure of Model of the Membrane-Bound GBP1 Oligomer also contains other interesting chemical elements:

Aluminium	(Al)	6 atoms
Fluorine	(F)	18 atoms

The binding sites of Magnesium atom in the Model of the Membrane-Bound GBP1 Oligomer (pdb code 8r1a). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Model of the Membrane-Bound GBP1 Oligomer, PDB code: 8r1a:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:100.0 occ:1.00 OG A:SER52 1.9 100.0 1.0 F1 A:AF3600 2.5 100.0 1.0 OG1 A:THR75 2.6 100.0 1.0 O2B A:GDP602 2.6 100.0 1.0 O1A A:GDP602 2.9 100.0 1.0 CB A:SER52 3.1 100.0 1.0 O A:SER66 3.1 100.0 1.0 O1B A:GDP602 3.5 100.0 1.0 PB A:GDP602 3.5 100.0 1.0 PA A:GDP602 3.7 100.0 1.0 O2A A:GDP602 3.8 100.0 1.0 CB A:THR75 4.0 100.0 1.0 N A:THR75 4.0 100.0 1.0 AL A:AF3600 4.1 100.0 1.0 O3A A:GDP602 4.1 100.0 1.0 CD2 A:HIS74 4.2 100.0 1.0 CB A:HIS74 4.2 100.0 1.0 C A:SER66 4.3 100.0 1.0 CA A:SER52 4.3 100.0 1.0 CA A:LEU67 4.4 100.0 1.0 N A:SER52 4.4 100.0 1.0 NH1 A:ARG48 4.5 100.0 1.0 CA A:THR75 4.5 100.0 1.0 CG A:HIS74 4.6 100.0 1.0 CD1 A:LEU67 4.6 100.0 1.0 OD2 A:ASP97 4.6 100.0 1.0 F3 A:AF3600 4.8 100.0 1.0 N A:LEU67 4.8 100.0 1.0 O3B A:GDP602 4.9 100.0 1.0 N A:GLY68 4.9 100.0 1.0 CG2 A:THR75 5.0 100.0 1.0 C A:HIS74 5.0 100.0 1.0

Magnesium binding site 2 out of 6 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:100.0 occ:1.00 OG B:SER52 1.7 100.0 1.0 O2B B:GDP602 2.0 100.0 1.0 OG1 B:THR75 2.3 100.0 1.0 F2 B:AF3600 2.4 100.0 1.0 CB B:SER52 3.0 100.0 1.0 O2A B:GDP602 3.1 100.0 1.0 PB B:GDP602 3.2 100.0 1.0 O3B B:GDP602 3.4 100.0 1.0 CB B:THR75 3.5 100.0 1.0 O1A B:GDP602 3.6 100.0 1.0 PA B:GDP602 3.6 100.0 1.0 O B:SER66 3.6 100.0 1.0 O3A B:GDP602 3.9 100.0 1.0 AL B:AF3600 4.0 100.0 1.0 N B:THR75 4.0 100.0 1.0 N B:SER52 4.1 100.0 1.0 CA B:SER52 4.1 100.0 1.0 OD2 B:ASP97 4.3 100.0 1.0 CA B:THR75 4.3 100.0 1.0 O1B B:GDP602 4.4 100.0 1.0 CG2 B:THR75 4.5 100.0 1.0 CB B:HIS74 4.7 100.0 1.0 F1 B:AF3600 4.8 100.0 1.0 CD2 B:HIS74 4.8 100.0 1.0 C B:SER66 4.9 100.0 1.0 NH1 B:ARG48 4.9 100.0 1.0 F3 B:AF3600 4.9 100.0 1.0 OD1 B:ASP97 5.0 100.0 1.0

Magnesium binding site 3 out of 6 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:100.0 occ:1.00 OG C:SER52 1.9 100.0 1.0 F1 C:AF3600 2.5 100.0 1.0 OG1 C:THR75 2.6 100.0 1.0 O2B C:GDP602 2.6 100.0 1.0 O1A C:GDP602 2.9 100.0 1.0 CB C:SER52 3.1 100.0 1.0 O C:SER66 3.1 100.0 1.0 O1B C:GDP602 3.5 100.0 1.0 PB C:GDP602 3.5 100.0 1.0 PA C:GDP602 3.7 100.0 1.0 O2A C:GDP602 3.8 100.0 1.0 CB C:THR75 4.0 100.0 1.0 N C:THR75 4.0 100.0 1.0 AL C:AF3600 4.1 100.0 1.0 O3A C:GDP602 4.1 100.0 1.0 CD2 C:HIS74 4.2 100.0 1.0 CB C:HIS74 4.2 100.0 1.0 C C:SER66 4.3 100.0 1.0 CA C:SER52 4.3 100.0 1.0 CA C:LEU67 4.4 100.0 1.0 N C:SER52 4.4 100.0 1.0 NH1 C:ARG48 4.5 100.0 1.0 CA C:THR75 4.5 100.0 1.0 CG C:HIS74 4.6 100.0 1.0 CD1 C:LEU67 4.6 100.0 1.0 OD2 C:ASP97 4.6 100.0 1.0 F3 C:AF3600 4.8 100.0 1.0 N C:LEU67 4.8 100.0 1.0 O3B C:GDP602 4.9 100.0 1.0 N C:GLY68 4.9 100.0 1.0 CG2 C:THR75 5.0 100.0 1.0 C C:HIS74 5.0 100.0 1.0

Magnesium binding site 4 out of 6 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:100.0 occ:1.00 OG D:SER52 1.7 100.0 1.0 O2B D:GDP602 2.0 100.0 1.0 OG1 D:THR75 2.3 100.0 1.0 F2 D:AF3600 2.4 100.0 1.0 CB D:SER52 3.0 100.0 1.0 O1A D:GDP602 3.1 100.0 1.0 PB D:GDP602 3.2 100.0 1.0 O3B D:GDP602 3.4 100.0 1.0 CB D:THR75 3.5 100.0 1.0 O2A D:GDP602 3.6 100.0 1.0 PA D:GDP602 3.6 100.0 1.0 O D:SER66 3.6 100.0 1.0 O3A D:GDP602 3.9 100.0 1.0 AL D:AF3600 4.0 100.0 1.0 N D:THR75 4.0 100.0 1.0 N D:SER52 4.1 100.0 1.0 CA D:SER52 4.1 100.0 1.0 OD2 D:ASP97 4.3 100.0 1.0 CA D:THR75 4.3 100.0 1.0 O1B D:GDP602 4.4 100.0 1.0 CG2 D:THR75 4.5 100.0 1.0 CB D:HIS74 4.7 100.0 1.0 F1 D:AF3600 4.8 100.0 1.0 CD2 D:HIS74 4.8 100.0 1.0 C D:SER66 4.9 100.0 1.0 NH1 D:ARG48 4.9 100.0 1.0 F3 D:AF3600 4.9 100.0 1.0 OD1 D:ASP97 4.9 100.0 1.0

Magnesium binding site 5 out of 6 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:100.0 occ:1.00 OG E:SER52 1.9 100.0 1.0 F1 E:AF3600 2.5 100.0 1.0 O2B E:GDP602 2.6 100.0 1.0 OG1 E:THR75 2.6 100.0 1.0 O1A E:GDP602 2.9 100.0 1.0 CB E:SER52 3.1 100.0 1.0 O E:SER66 3.1 100.0 1.0 O1B E:GDP602 3.5 100.0 1.0 PB E:GDP602 3.5 100.0 1.0 PA E:GDP602 3.7 100.0 1.0 O2A E:GDP602 3.8 100.0 1.0 CB E:THR75 4.0 100.0 1.0 N E:THR75 4.0 100.0 1.0 AL E:AF3600 4.1 100.0 1.0 O3A E:GDP602 4.1 100.0 1.0 CD2 E:HIS74 4.2 100.0 1.0 CB E:HIS74 4.2 100.0 1.0 C E:SER66 4.3 100.0 1.0 CA E:SER52 4.3 100.0 1.0 CA E:LEU67 4.4 100.0 1.0 N E:SER52 4.4 100.0 1.0 NH1 E:ARG48 4.5 100.0 1.0 CA E:THR75 4.5 100.0 1.0 CG E:HIS74 4.6 100.0 1.0 CD1 E:LEU67 4.6 100.0 1.0 OD2 E:ASP97 4.6 100.0 1.0 F3 E:AF3600 4.8 100.0 1.0 N E:LEU67 4.8 100.0 1.0 O3B E:GDP602 4.9 100.0 1.0 N E:GLY68 4.9 100.0 1.0 CG2 E:THR75 5.0 100.0 1.0 C E:HIS74 5.0 100.0 1.0

Magnesium binding site 6 out of 6 in the Model of the Membrane-Bound GBP1 Oligomer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Model of the Membrane-Bound GBP1 Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:100.0 occ:1.00 OG F:SER52 1.7 100.0 1.0 O2B F:GDP602 2.0 100.0 1.0 OG1 F:THR75 2.3 100.0 1.0 F2 F:AF3600 2.4 100.0 1.0 CB F:SER52 3.0 100.0 1.0 O1A F:GDP602 3.1 100.0 1.0 PB F:GDP602 3.2 100.0 1.0 O3B F:GDP602 3.4 100.0 1.0 CB F:THR75 3.5 100.0 1.0 O2A F:GDP602 3.6 100.0 1.0 PA F:GDP602 3.6 100.0 1.0 O F:SER66 3.6 100.0 1.0 O3A F:GDP602 3.9 100.0 1.0 AL F:AF3600 4.0 100.0 1.0 N F:THR75 4.0 100.0 1.0 N F:SER52 4.1 100.0 1.0 CA F:SER52 4.1 100.0 1.0 OD2 F:ASP97 4.3 100.0 1.0 CA F:THR75 4.3 100.0 1.0 O1B F:GDP602 4.4 100.0 1.0 CG2 F:THR75 4.5 100.0 1.0 CB F:HIS74 4.7 100.0 1.0 F1 F:AF3600 4.8 100.0 1.0 CD2 F:HIS74 4.8 100.0 1.0 C F:SER66 4.9 100.0 1.0 NH1 F:ARG48 4.9 100.0 1.0 F3 F:AF3600 4.9 100.0 1.0 OD1 F:ASP97 5.0 100.0 1.0

M.Weismehl, X.Chu, M.Kutsch, P.Lauterjung, C.Herrmann, M.Kudryashev, O.Daumke. Elucidating the Activation Mechanism For GBP1 Oligomerization To Be Published.