Magnesium in PDB 8r2h: Cryo-Em Structure of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Plasmodium Falciparum

The binding sites of Magnesium atom in the Cryo-Em Structure of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Plasmodium Falciparum (pdb code 8r2h). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Plasmodium Falciparum, PDB code: 8r2h:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Plasmodium Falciparum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Plasmodium Falciparum within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1301 b:36.6 occ:1.00 O A:GLN659 1.9 41.8 1.0 O2A A:TPP1302 2.0 37.1 1.0 OD1 A:ASN657 2.1 43.8 1.0 OD1 A:ASP628 2.6 34.1 1.0 CG A:ASN657 2.8 37.2 1.0 ND2 A:ASN657 2.8 35.5 1.0 C A:GLN659 2.9 44.1 1.0 O2B A:TPP1302 3.1 30.7 1.0 CB A:GLN659 3.1 36.0 1.0 O3B A:TPP1302 3.2 36.8 1.0 CG A:ASP628 3.3 25.7 1.0 CA A:GLN659 3.3 40.5 1.0 OD2 A:ASP628 3.3 29.5 1.0 PA A:TPP1302 3.3 34.7 1.0 N A:GLN659 3.5 42.7 1.0 PB A:TPP1302 3.5 33.3 1.0 O7 A:TPP1302 3.8 41.6 1.0 O3A A:TPP1302 3.8 31.7 1.0 N A:VAL660 4.1 41.6 1.0 N A:GLY629 4.2 34.1 1.0 CB A:ASN657 4.2 31.0 1.0 CG A:GLN659 4.3 39.5 1.0 N A:ASP628 4.6 29.0 1.0 O1A A:TPP1302 4.6 34.9 1.0 CB A:ASP628 4.7 24.7 1.0 CA A:VAL660 4.7 41.7 1.0 C A:GLY658 4.8 40.5 1.0 N A:GLY658 4.8 41.2 1.0 C7 A:TPP1302 4.9 36.3 1.0 C A:ASN657 4.9 34.9 1.0 CA A:ASN657 4.9 24.4 1.0 N A:ASN657 4.9 17.9 1.0 CA A:GLY629 4.9 27.7 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Plasmodium Falciparum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Plasmodium Falciparum within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1301 b:34.5 occ:1.00 O B:GLN659 1.9 46.0 1.0 OD1 B:ASN657 2.0 46.3 1.0 O1A B:TPP1302 2.4 40.8 1.0 OD1 B:ASP628 2.5 34.3 1.0 CG B:ASN657 2.7 37.0 1.0 C B:GLN659 2.8 48.2 1.0 ND2 B:ASN657 2.9 38.5 1.0 CB B:GLN659 3.1 41.0 1.0 CA B:GLN659 3.2 42.5 1.0 N B:GLN659 3.2 42.5 1.0 CG B:ASP628 3.2 30.3 1.0 OD2 B:ASP628 3.2 31.6 1.0 O3B B:TPP1302 3.3 38.0 1.0 O2B B:TPP1302 3.3 32.6 1.0 PA B:TPP1302 3.7 35.1 1.0 PB B:TPP1302 3.8 34.9 1.0 O7 B:TPP1302 4.0 40.4 1.0 N B:VAL660 4.1 43.0 1.0 O3A B:TPP1302 4.1 31.3 1.0 CB B:ASN657 4.2 31.6 1.0 N B:GLY629 4.4 37.2 1.0 N B:GLY658 4.5 42.3 1.0 C B:GLY658 4.5 41.4 1.0 CG B:GLN659 4.5 44.0 1.0 OE1 B:GLN659 4.6 46.8 1.0 C B:ASN657 4.6 36.9 1.0 CB B:ASP628 4.7 27.3 1.0 CA B:VAL660 4.7 41.7 1.0 N B:ASP628 4.7 34.5 1.0 CA B:ASN657 4.7 25.9 1.0 N B:ASN657 4.8 17.8 1.0 O2A B:TPP1302 5.0 35.0 1.0

V.O.Gawriljuk, A.S.Godoy, R.Oerlemans, M.R.Groves. Cryo-Em Structure of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxps) From Plasmodium Falciparum To Be Published.