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Magnesium in PDB 8r6r: Mycobacterium Smegnatis Rna Polymerase RP2-Like Transcription Initiation Complex with Sigmaa, Rbpa and Open Promoter Dna

Enzymatic activity of Mycobacterium Smegnatis Rna Polymerase RP2-Like Transcription Initiation Complex with Sigmaa, Rbpa and Open Promoter Dna

All present enzymatic activity of Mycobacterium Smegnatis Rna Polymerase RP2-Like Transcription Initiation Complex with Sigmaa, Rbpa and Open Promoter Dna:
2.7.7.6;

Other elements in 8r6r:

The structure of Mycobacterium Smegnatis Rna Polymerase RP2-Like Transcription Initiation Complex with Sigmaa, Rbpa and Open Promoter Dna also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mycobacterium Smegnatis Rna Polymerase RP2-Like Transcription Initiation Complex with Sigmaa, Rbpa and Open Promoter Dna (pdb code 8r6r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mycobacterium Smegnatis Rna Polymerase RP2-Like Transcription Initiation Complex with Sigmaa, Rbpa and Open Promoter Dna, PDB code: 8r6r:

Magnesium binding site 1 out of 1 in 8r6r

Go back to Magnesium Binding Sites List in 8r6r
Magnesium binding site 1 out of 1 in the Mycobacterium Smegnatis Rna Polymerase RP2-Like Transcription Initiation Complex with Sigmaa, Rbpa and Open Promoter Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Smegnatis Rna Polymerase RP2-Like Transcription Initiation Complex with Sigmaa, Rbpa and Open Promoter Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2003

b:9.4
occ:1.00
 OD1 D:ASP539 2.1 3.1 1.0
OD1 D:ASP537 2.2 2.7 1.0
OD1 D:ASP535 2.2 9.4 1.0
CG D:ASP535 3.0 9.4 1.0
CG D:ASP537 3.0 2.7 1.0
OD2 D:ASP535 3.1 9.4 1.0
CG D:ASP539 3.1 3.1 1.0
OD2 D:ASP537 3.2 2.7 1.0
OD2 D:ASP539 3.6 3.1 1.0
O D:ASP535 4.0 9.4 1.0
N D:ASP539 4.3 3.1 1.0
CB D:ASP537 4.4 2.7 1.0
CB D:ASP539 4.4 3.1 1.0
CB D:ASP535 4.4 9.4 1.0
C D:ASP537 4.6 2.7 1.0
C D:ASP535 4.6 9.4 1.0
N D:ASP537 4.7 2.7 1.0
N D:GLY538 4.7 2.2 1.0
CA D:ASP539 4.7 3.1 1.0
CA D:ASP537 4.8 2.7 1.0
O D:ASP537 4.8 2.7 1.0
C D:GLY538 4.9 2.2 1.0
N D:ASP535 4.9 9.4 1.0
CA D:ASP535 4.9 9.4 1.0

Reference:

T.Koval, L.Dohnalek, K.Libor, T.Kouba. Molecular Insights Into Rna Polymerase Recycling By Mycobacterial Held To Be Published.
Page generated: Thu Oct 31 22:08:24 2024

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