Magnesium in PDB 8r6y: Structure of the Sftsv L Protein Stalled in A Transcription-Specific Early Elongation State with Bound Capped Rna [Transcription-Early- Elongation]

The binding sites of Magnesium atom in the Structure of the Sftsv L Protein Stalled in A Transcription-Specific Early Elongation State with Bound Capped Rna [Transcription-Early- Elongation] (pdb code 8r6y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Sftsv L Protein Stalled in A Transcription-Specific Early Elongation State with Bound Capped Rna [Transcription-Early- Elongation], PDB code: 8r6y:

Magnesium binding site 1 out of 1 in the Structure of the Sftsv L Protein Stalled in A Transcription-Specific Early Elongation State with Bound Capped Rna [Transcription-Early- Elongation]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Sftsv L Protein Stalled in A Transcription-Specific Early Elongation State with Bound Capped Rna [Transcription-Early- Elongation] within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2102 b:105.7 occ:1.00 O3B A:2KH2101 2.0 125.1 1.0 O1A A:2KH2101 2.2 124.3 1.0 O A:ALA986 2.3 106.2 1.0 OD1 A:ASP985 2.6 108.0 1.0 OD2 A:ASP1126 3.0 98.6 1.0 PG A:2KH2101 3.1 124.6 1.0 PB A:2KH2101 3.1 139.1 1.0 O1G A:2KH2101 3.2 129.6 1.0 O1B A:2KH2101 3.3 130.3 1.0 C A:ALA986 3.4 100.4 1.0 PA A:2KH2101 3.5 128.3 1.0 O3G A:2KH2101 3.7 122.4 1.0 N3A A:2KH2101 3.8 134.2 1.0 CG A:ASP985 3.8 103.9 1.0 N A:ALA986 3.9 92.1 1.0 CG A:ASP1126 3.9 90.8 1.0 O A:LYS987 4.1 100.0 1.0 CA A:ALA986 4.1 94.6 1.0 OD2 A:ASP985 4.2 103.1 1.0 CB A:ALA986 4.3 96.5 1.0 O2A A:2KH2101 4.3 122.2 1.0 O2G A:2KH2101 4.4 122.2 1.0 O2B A:2KH2101 4.4 126.4 1.0 C A:LYS987 4.5 96.5 1.0 N A:LYS987 4.5 96.4 1.0 C5' A:2KH2101 4.6 128.9 1.0 CB A:ASP1126 4.6 82.1 1.0 O5' A:2KH2101 4.6 124.7 1.0 OD1 A:ASP1126 4.7 96.8 1.0 NZ A:LYS1170 4.8 91.6 1.0 CA A:LYS987 4.8 93.9 1.0 CB A:ASP985 5.0 97.5 1.0

H.M.Williams, S.R.Thorkelsson, D.Vogel, C.Busch, M.Milewski, S.Cusack, K.Grunewald, E.R.J.Quemin, M.Rosenthal. Structural Snapshots of Phenuivirus Cap-Snatching and Transcription Biorxiv 2023.
ISSN: ISSN 2692-8205
DOI: 10.1101/2023.11.29.569195