Magnesium in PDB 8rc1: MAP7 Mtbd (Microtubule Binding Domain) Decorated Microtubule Protofilament

The binding sites of Magnesium atom in the MAP7 Mtbd (Microtubule Binding Domain) Decorated Microtubule Protofilament (pdb code 8rc1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the MAP7 Mtbd (Microtubule Binding Domain) Decorated Microtubule Protofilament, PDB code: 8rc1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the MAP7 Mtbd (Microtubule Binding Domain) Decorated Microtubule Protofilament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of MAP7 Mtbd (Microtubule Binding Domain) Decorated Microtubule Protofilament within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:114.2 occ:1.00 O1B A:GTP501 2.0 116.7 1.0 O1G A:GTP501 2.0 116.7 1.0 PG A:GTP501 3.2 116.7 1.0 PB A:GTP501 3.2 116.7 1.0 O3B A:GTP501 3.4 116.7 1.0 O2G A:GTP501 3.8 116.7 1.0 OD1 A:ASP69 3.8 120.4 1.0 OD2 A:ASP69 3.9 120.4 1.0 O3A A:GTP501 4.0 116.7 1.0 CB A:GLN11 4.1 110.4 1.0 CB A:GLU71 4.2 122.7 1.0 OE1 A:GLN11 4.2 110.4 1.0 NZ B:LYS252 4.3 110.0 1.0 CG A:ASP69 4.3 120.4 1.0 O2B A:GTP501 4.3 116.7 1.0 N A:GLN11 4.4 110.4 1.0 O3G A:GTP501 4.4 116.7 1.0 OG1 A:THR145 4.4 114.8 1.0 O1A A:GTP501 4.7 116.7 1.0 CB A:ASP98 4.8 118.4 1.0 CA A:GLN11 4.8 110.4 1.0 PA A:GTP501 4.9 116.7 1.0 CB A:THR145 5.0 114.8 1.0

Magnesium binding site 2 out of 2 in the MAP7 Mtbd (Microtubule Binding Domain) Decorated Microtubule Protofilament


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of MAP7 Mtbd (Microtubule Binding Domain) Decorated Microtubule Protofilament within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:125.5 occ:1.00 O1G C:GTP501 2.0 127.2 1.0 O1B C:GTP501 2.1 127.2 1.0 PG C:GTP501 3.1 127.2 1.0 PB C:GTP501 3.3 127.2 1.0 O3B C:GTP501 3.5 127.2 1.0 O2G C:GTP501 3.6 127.2 1.0 OD2 C:ASP69 3.8 123.3 1.0 OD1 C:ASP69 3.8 123.3 1.0 CB C:GLN11 3.8 119.5 1.0 O1A C:GTP501 3.9 127.2 1.0 OE1 C:GLN11 4.1 119.5 1.0 OG1 C:THR145 4.1 123.5 1.0 N C:GLN11 4.1 119.5 1.0 CG C:ASP69 4.2 123.3 1.0 O3A C:GTP501 4.2 127.2 1.0 O2B C:GTP501 4.3 127.2 1.0 CB C:GLU71 4.3 127.9 1.0 O3G C:GTP501 4.4 127.2 1.0 CB C:THR145 4.5 123.5 1.0 CA C:GLN11 4.5 119.5 1.0 PA C:GTP501 4.6 127.2 1.0 CB C:ASP98 4.8 127.7 1.0 CD C:GLN11 4.9 119.5 1.0 CG C:GLN11 5.0 119.5 1.0

A.Adler, M.Bangera, J.W.Beugelink, S.Bahri, H.Van Ingen, C.A.Moores, M.Baldus. A Structural and Dynamic Visualization of the Interaction Between MAP7 and Microtubules. Nat Commun V. 15 1948 2024.
ISSN: ESSN 2041-1723
PubMed: 38431715
DOI: 10.1038/S41467-024-46260-5