Magnesium in PDB 8rcn: Cryoem Structure of MTORC1 with A Paediatric Kidney Cancer-Associated 1455-Ewed-1458 Duplication in Mtor, Focused Region of Mtor and Raptor on One Protomer Copy.

Enzymatic activity of Cryoem Structure of MTORC1 with A Paediatric Kidney Cancer-Associated 1455-Ewed-1458 Duplication in Mtor, Focused Region of Mtor and Raptor on One Protomer Copy.

All present enzymatic activity of Cryoem Structure of MTORC1 with A Paediatric Kidney Cancer-Associated 1455-Ewed-1458 Duplication in Mtor, Focused Region of Mtor and Raptor on One Protomer Copy.:
2.7.11.1;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryoem Structure of MTORC1 with A Paediatric Kidney Cancer-Associated 1455-Ewed-1458 Duplication in Mtor, Focused Region of Mtor and Raptor on One Protomer Copy. (pdb code 8rcn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryoem Structure of MTORC1 with A Paediatric Kidney Cancer-Associated 1455-Ewed-1458 Duplication in Mtor, Focused Region of Mtor and Raptor on One Protomer Copy., PDB code: 8rcn:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8rcn

Go back to Magnesium Binding Sites List in 8rcn
Magnesium binding site 1 out of 2 in the Cryoem Structure of MTORC1 with A Paediatric Kidney Cancer-Associated 1455-Ewed-1458 Duplication in Mtor, Focused Region of Mtor and Raptor on One Protomer Copy.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of MTORC1 with A Paediatric Kidney Cancer-Associated 1455-Ewed-1458 Duplication in Mtor, Focused Region of Mtor and Raptor on One Protomer Copy. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg3001

b:114.6
occ:1.00
 HG23 B:THR2245 1.7 42.6 1.0
O B:PRO2341 2.0 47.3 1.0
O B:SER2342 2.0 54.9 1.0
O B:LEU2344 2.3 34.4 1.0
C B:SER2342 2.3 52.4 1.0
HA B:SER2342 2.5 45.8 1.0
CG2 B:THR2245 2.7 40.7 1.0
CA B:SER2342 2.8 45.2 1.0
H B:LEU2344 2.8 34.0 1.0
C B:PRO2341 3.0 34.5 1.0
HG22 B:THR2245 3.0 42.1 1.0
N B:LEU2344 3.0 16.7 1.0
HG21 B:THR2245 3.1 42.5 1.0
N B:ASN2343 3.1 32.9 1.0
C B:LEU2344 3.1 23.0 1.0
H B:LEU2246 3.3 40.5 1.0
HA B:THR2245 3.3 41.4 1.0
N B:SER2342 3.3 39.7 1.0
C B:ASN2343 3.5 26.7 1.0
HG1 B:THR2245 3.6 43.9 1.0
CA B:LEU2344 3.6 17.8 1.0
CB B:THR2245 3.7 38.4 1.0
H B:ASN2343 3.7 39.0 1.0
CA B:ASN2343 3.8 28.9 1.0
CA B:THR2245 3.8 30.2 1.0
N B:LEU2246 3.9 41.0 1.0
SD B:MET2345 3.9 61.2 1.0
OG1 B:THR2245 3.9 51.0 1.0
H B:HIS2247 4.0 44.8 1.0
HB2 B:LEU2344 4.0 33.5 1.0
HA B:ASN2343 4.0 39.1 1.0
HB3 B:LEU2246 4.2 38.1 1.0
H B:SER2342 4.2 44.5 1.0
CB B:SER2342 4.2 45.6 1.0
N B:MET2345 4.2 33.7 1.0
O B:ASN2343 4.2 42.1 1.0
HA B:MET2345 4.3 42.1 1.0
C B:THR2245 4.3 41.5 1.0
CA B:PRO2341 4.3 30.9 1.0
HB3 B:SER2342 4.3 46.5 1.0
HA B:PRO2341 4.3 38.3 1.0
HG2 B:MET2345 4.4 45.2 1.0
HA B:LEU2344 4.4 31.4 1.0
CB B:LEU2344 4.4 25.4 1.0
HB B:THR2245 4.5 42.5 1.0
HD11 B:ILE2356 4.5 44.5 1.0
O B:HIS2340 4.6 41.5 1.0
HB2 B:SER2342 4.7 45.2 1.0
CG B:MET2345 4.8 45.0 1.0
CA B:MET2345 4.8 23.4 1.0
HB2 B:LEU2246 4.8 37.8 1.0
N B:HIS2247 4.8 43.8 1.0
CB B:LEU2246 4.8 26.7 1.0
CA B:LEU2246 4.9 39.0 1.0
H B:MET2345 4.9 44.1 1.0
HB3 B:HIS2247 5.0 46.6 1.0

Magnesium binding site 2 out of 2 in 8rcn

Go back to Magnesium Binding Sites List in 8rcn
Magnesium binding site 2 out of 2 in the Cryoem Structure of MTORC1 with A Paediatric Kidney Cancer-Associated 1455-Ewed-1458 Duplication in Mtor, Focused Region of Mtor and Raptor on One Protomer Copy.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of MTORC1 with A Paediatric Kidney Cancer-Associated 1455-Ewed-1458 Duplication in Mtor, Focused Region of Mtor and Raptor on One Protomer Copy. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg3002

b:93.1
occ:1.00
 HD11 B:LEU2185 1.9 51.0 1.0
N9 B:ANP3000 2.3 82.7 1.0
C4 B:ANP3000 2.3 82.6 1.0
O4' B:ANP3000 2.5 85.7 1.0
HD13 B:LEU2185 2.6 50.8 1.0
CD1 B:LEU2185 2.6 53.5 1.0
C1' B:ANP3000 2.6 81.8 1.0
H1' B:ANP3000 2.7 77.8 1.0
N3 B:ANP3000 2.7 83.0 1.0
HZ3 B:TRP2239 3.1 48.6 1.0
C8 B:ANP3000 3.1 74.5 1.0
C5 B:ANP3000 3.1 79.3 1.0
HD12 B:LEU2185 3.1 51.2 1.0
N7 B:ANP3000 3.5 73.8 1.0
HD21 B:LEU2185 3.5 51.4 1.0
C2 B:ANP3000 3.7 78.0 1.0
H8 B:ANP3000 3.8 76.5 1.0
CZ3 B:TRP2239 3.8 48.8 1.0
CG B:LEU2185 3.8 50.4 1.0
C2' B:ANP3000 3.9 77.9 1.0
HD22 B:LEU2185 3.9 50.7 1.0
C6 B:ANP3000 3.9 79.1 1.0
CD2 B:LEU2185 3.9 51.3 1.0
O5' B:ANP3000 3.9 80.2 1.0
C4' B:ANP3000 4.0 82.3 1.0
N1 B:ANP3000 4.2 78.7 1.0
HG B:LEU2185 4.2 51.8 1.0
HE3 B:TRP2239 4.3 48.7 1.0
H2 B:ANP3000 4.3 75.7 1.0
HD13 B:ILE2163 4.3 73.3 1.0
H2' B:ANP3000 4.4 77.0 1.0
CE3 B:TRP2239 4.4 48.2 1.0
C5' B:ANP3000 4.5 79.4 1.0
C3' B:ANP3000 4.6 84.3 1.0
H4' B:ANP3000 4.6 78.0 1.0
HH2 B:TRP2239 4.6 48.6 1.0
CH2 B:TRP2239 4.7 46.4 1.0
O2' B:ANP3000 4.7 68.0 1.0
H5'1 B:ANP3000 4.7 78.0 1.0
HD12 B:ILE2163 4.8 73.5 1.0
HD23 B:LEU2185 4.9 52.0 1.0
CD1 B:ILE2163 4.9 75.9 1.0
HB3 B:LEU2185 5.0 48.2 1.0

Reference:

M.Anandapadamanaban, I.M.Hay, O.Perisic, R.L.Williams. Cryoem Structure of MTORC1 with A Paediatric Kidney Cancer-Associated 1455-Ewed-1458 Duplication in Mtor, Focused Region of Mtor and Raptor on One Protomer Copy. To Be Published.
Page generated: Fri Oct 4 17:31:28 2024

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