Magnesium in PDB 8reb: Cryo-Em Structure of Bacterial Rna Polymerase-SIGMA54 Initial Transcribing Complex - 6NT Complex

Enzymatic activity of Cryo-Em Structure of Bacterial Rna Polymerase-SIGMA54 Initial Transcribing Complex - 6NT Complex

All present enzymatic activity of Cryo-Em Structure of Bacterial Rna Polymerase-SIGMA54 Initial Transcribing Complex - 6NT Complex:
2.7.7.6;

Other elements in 8reb:

The structure of Cryo-Em Structure of Bacterial Rna Polymerase-SIGMA54 Initial Transcribing Complex - 6NT Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Bacterial Rna Polymerase-SIGMA54 Initial Transcribing Complex - 6NT Complex (pdb code 8reb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Bacterial Rna Polymerase-SIGMA54 Initial Transcribing Complex - 6NT Complex, PDB code: 8reb:

Magnesium binding site 1 out of 1 in 8reb

Go back to Magnesium Binding Sites List in 8reb
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Bacterial Rna Polymerase-SIGMA54 Initial Transcribing Complex - 6NT Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Bacterial Rna Polymerase-SIGMA54 Initial Transcribing Complex - 6NT Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1501

b:6.4
occ:1.00
 O3' R:G4 2.0 10.2 1.0
OD1 D:ASP460 2.0 25.3 1.0
OD1 D:ASP464 2.1 26.0 1.0
OD1 D:ASP462 2.7 20.8 1.0
O2' R:G4 2.8 10.2 1.0
CG D:ASP464 2.8 26.0 1.0
OD2 D:ASP464 2.9 26.0 1.0
CG D:ASP460 3.0 25.3 1.0
C3' R:G4 3.0 10.2 1.0
OD2 D:ASP460 3.3 25.3 1.0
C4' R:G4 3.5 10.2 1.0
C2' R:G4 3.5 10.2 1.0
CG D:ASP462 3.6 20.8 1.0
OD2 D:ASP462 3.8 20.8 1.0
O D:ASP460 3.9 25.3 1.0
CB D:ASP464 4.3 26.0 1.0
NH2 D:ARG425 4.3 25.6 1.0
CB D:ASP460 4.4 25.3 1.0
C5' R:G4 4.4 10.2 1.0
N D:ASP460 4.4 25.3 1.0
O4' R:G4 4.5 10.2 1.0
C1' R:G4 4.6 10.2 1.0
C D:ASP460 4.6 25.3 1.0
CA D:ASP460 4.7 25.3 1.0
N D:ASP464 4.8 26.0 1.0
CA D:ASP464 4.8 26.0 1.0

Reference:

F.Gao, F.Ye, B.Zhang, N.Cronin, M.Buck, X.Zhang. Structural Basis of Sigma 54 Displacement and Promoter Escape in Bacterial Transcription. Proc.Natl.Acad.Sci.Usa V. 121 70120 2024.
ISSN: ESSN 1091-6490
PubMed: 38170755
DOI: 10.1073/PNAS.2309670120
Page generated: Fri Oct 4 17:33:29 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy