Magnesium in PDB 8rjf: Tada/Cpaf with Adp

The binding sites of Magnesium atom in the Tada/Cpaf with Adp (pdb code 8rjf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Tada/Cpaf with Adp, PDB code: 8rjf:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Tada/Cpaf with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tada/Cpaf with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:30.0 occ:1.00 O1B A:ADP601 1.8 60.2 1.0 OG1 A:THR288 2.3 51.0 1.0 HG1 A:THR288 2.7 51.0 1.0 PB A:ADP601 3.0 60.2 1.0 CB A:THR288 3.4 51.0 1.0 HB A:THR288 3.4 51.0 1.0 O3B A:ADP601 3.5 60.2 1.0 O2B A:ADP601 3.7 60.2 1.0 H A:THR288 3.7 51.0 1.0 O2A A:ADP601 3.8 60.2 1.0 OE1 A:GLU357 3.9 55.2 1.0 HG3 A:LYS287 4.0 52.9 1.0 HG23 A:THR288 4.2 51.0 1.0 O3A A:ADP601 4.2 60.2 1.0 N A:THR288 4.3 51.0 1.0 HE2 A:LYS287 4.3 52.9 1.0 CA A:THR288 4.4 51.0 1.0 OE1 A:GLU312 4.4 60.5 1.0 CG2 A:THR288 4.4 51.0 1.0 HZ2 A:LYS287 4.5 52.9 1.0 PA A:ADP601 4.6 60.2 1.0 HA A:THR288 4.6 51.0 1.0 HB2 A:GLU357 4.8 55.2 1.0 CG A:LYS287 4.9 52.9 1.0 HG2 A:LYS287 4.9 52.9 1.0 HG22 A:THR288 4.9 51.0 1.0

Magnesium binding site 2 out of 6 in the Tada/Cpaf with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tada/Cpaf with Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg703 b:58.4 occ:1.00 HG1 B:THR288 1.8 59.6 1.0 OG1 B:THR288 2.2 59.6 1.0 O1B B:ADP702 2.3 70.5 1.0 CB B:THR288 3.5 59.6 1.0 PB B:ADP702 3.5 70.5 1.0 OE1 B:GLU357 3.5 57.1 1.0 HB B:THR288 3.6 59.6 1.0 H B:THR288 3.7 59.6 1.0 O3B B:ADP702 4.0 70.5 1.0 O2A B:ADP702 4.0 70.5 1.0 HG22 B:THR288 4.2 59.6 1.0 HB2 B:LYS287 4.2 62.6 1.0 OE1 B:GLU312 4.2 65.7 1.0 N B:THR288 4.2 59.6 1.0 O2B B:ADP702 4.2 70.5 1.0 HE2 B:LYS287 4.3 62.6 1.0 CA B:THR288 4.4 59.6 1.0 HB2 B:GLU357 4.4 57.1 1.0 HZ3 B:LYS287 4.4 62.6 1.0 CG2 B:THR288 4.4 59.6 1.0 HA B:THR288 4.5 59.6 1.0 HZ2 B:LYS287 4.6 62.6 1.0 CD B:GLU357 4.7 57.1 1.0 O3A B:ADP702 4.7 70.5 1.0 PA B:ADP702 4.8 70.5 1.0 NZ B:LYS287 4.8 62.6 1.0 HG21 B:THR288 4.8 59.6 1.0

Magnesium binding site 3 out of 6 in the Tada/Cpaf with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Tada/Cpaf with Adp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg703 b:54.7 occ:1.00 O3B C:ADP702 1.8 60.2 1.0 OG1 C:THR288 2.2 57.0 1.0 HG1 C:THR288 2.6 57.0 1.0 PB C:ADP702 3.3 60.2 1.0 CB C:THR288 3.5 57.0 1.0 OE1 C:GLU312 3.6 65.5 1.0 HB C:THR288 3.6 57.0 1.0 OE1 C:GLU357 3.7 58.2 1.0 H C:THR288 3.7 57.0 1.0 O2B C:ADP702 3.9 60.2 1.0 HH21 C:ARG217 4.0 71.7 1.0 OE2 C:GLU312 4.0 65.5 1.0 O3A C:ADP702 4.0 60.2 1.0 HE2 C:LYS287 4.1 55.4 1.0 HH22 C:ARG217 4.1 71.7 1.0 HB2 C:LYS287 4.2 55.4 1.0 CD C:GLU312 4.2 65.5 1.0 HG22 C:THR288 4.2 57.0 1.0 O1B C:ADP702 4.2 60.2 1.0 NH2 C:ARG217 4.2 71.7 1.0 N C:THR288 4.3 57.0 1.0 HZ3 C:LYS287 4.3 55.4 1.0 CA C:THR288 4.4 57.0 1.0 CG2 C:THR288 4.5 57.0 1.0 HZ2 C:LYS287 4.5 55.4 1.0 O1A C:ADP702 4.5 60.2 1.0 HA C:THR288 4.6 57.0 1.0 NZ C:LYS287 4.7 55.4 1.0 HB2 C:GLU357 4.7 58.2 1.0 PA C:ADP702 4.7 60.2 1.0 CE C:LYS287 4.9 55.4 1.0 HG21 C:THR288 4.9 57.0 1.0 CD C:GLU357 4.9 58.2 1.0 O2A C:ADP702 5.0 60.2 1.0

Magnesium binding site 4 out of 6 in the Tada/Cpaf with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Tada/Cpaf with Adp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:30.0 occ:1.00 O1B D:ADP601 1.8 60.2 1.0 OG1 D:THR288 2.3 51.0 1.0 HG1 D:THR288 2.7 51.0 1.0 PB D:ADP601 3.0 60.2 1.0 CB D:THR288 3.4 51.0 1.0 HB D:THR288 3.4 51.0 1.0 O3B D:ADP601 3.5 60.2 1.0 O2B D:ADP601 3.7 60.2 1.0 H D:THR288 3.7 51.0 1.0 O2A D:ADP601 3.8 60.2 1.0 OE1 D:GLU357 3.9 55.2 1.0 HG3 D:LYS287 4.1 52.9 1.0 HG23 D:THR288 4.2 51.0 1.0 O3A D:ADP601 4.2 60.2 1.0 N D:THR288 4.3 51.0 1.0 HE2 D:LYS287 4.3 52.9 1.0 CA D:THR288 4.4 51.0 1.0 OE1 D:GLU312 4.4 60.5 1.0 CG2 D:THR288 4.4 51.0 1.0 HZ2 D:LYS287 4.5 52.9 1.0 PA D:ADP601 4.6 60.2 1.0 HA D:THR288 4.6 51.0 1.0 HB2 D:GLU357 4.8 55.2 1.0 CG D:LYS287 4.9 52.9 1.0 HG2 D:LYS287 4.9 52.9 1.0 HG22 D:THR288 4.9 51.0 1.0

Magnesium binding site 5 out of 6 in the Tada/Cpaf with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Tada/Cpaf with Adp within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg703 b:58.4 occ:1.00 HG1 E:THR288 1.8 59.6 1.0 OG1 E:THR288 2.2 59.6 1.0 O1B E:ADP702 2.3 70.5 1.0 CB E:THR288 3.5 59.6 1.0 PB E:ADP702 3.5 70.5 1.0 OE1 E:GLU357 3.5 57.1 1.0 HB E:THR288 3.6 59.6 1.0 H E:THR288 3.7 59.6 1.0 O3B E:ADP702 4.0 70.5 1.0 O2A E:ADP702 4.0 70.5 1.0 HG22 E:THR288 4.2 59.6 1.0 HB2 E:LYS287 4.2 62.6 1.0 OE1 E:GLU312 4.2 65.7 1.0 N E:THR288 4.2 59.6 1.0 O2B E:ADP702 4.2 70.5 1.0 HE2 E:LYS287 4.3 62.6 1.0 CA E:THR288 4.4 59.6 1.0 HB2 E:GLU357 4.4 57.1 1.0 HZ3 E:LYS287 4.4 62.6 1.0 CG2 E:THR288 4.4 59.6 1.0 HA E:THR288 4.5 59.6 1.0 HZ2 E:LYS287 4.6 62.6 1.0 CD E:GLU357 4.7 57.1 1.0 O3A E:ADP702 4.7 70.5 1.0 PA E:ADP702 4.8 70.5 1.0 NZ E:LYS287 4.8 62.6 1.0 HG21 E:THR288 4.8 59.6 1.0

Magnesium binding site 6 out of 6 in the Tada/Cpaf with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Tada/Cpaf with Adp within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg703 b:54.7 occ:1.00 O3B F:ADP702 1.8 60.2 1.0 OG1 F:THR288 2.2 57.0 1.0 HG1 F:THR288 2.6 57.0 1.0 PB F:ADP702 3.3 60.2 1.0 CB F:THR288 3.5 57.0 1.0 OE1 F:GLU312 3.6 65.5 1.0 HB F:THR288 3.6 57.0 1.0 OE1 F:GLU357 3.7 58.2 1.0 H F:THR288 3.7 57.0 1.0 O2B F:ADP702 3.9 60.2 1.0 OE2 F:GLU312 4.0 65.5 1.0 HH21 F:ARG217 4.0 71.7 1.0 O3A F:ADP702 4.0 60.2 1.0 HE2 F:LYS287 4.1 55.4 1.0 HH22 F:ARG217 4.1 71.7 1.0 HB2 F:LYS287 4.2 55.4 1.0 CD F:GLU312 4.2 65.5 1.0 O1B F:ADP702 4.2 60.2 1.0 HG22 F:THR288 4.2 57.0 1.0 NH2 F:ARG217 4.2 71.7 1.0 N F:THR288 4.3 57.0 1.0 HZ3 F:LYS287 4.3 55.4 1.0 CA F:THR288 4.4 57.0 1.0 CG2 F:THR288 4.5 57.0 1.0 HZ2 F:LYS287 4.5 55.4 1.0 O1A F:ADP702 4.5 60.2 1.0 HA F:THR288 4.6 57.0 1.0 NZ F:LYS287 4.7 55.4 1.0 HB2 F:GLU357 4.7 58.2 1.0 PA F:ADP702 4.7 60.2 1.0 CE F:LYS287 4.9 55.4 1.0 HG21 F:THR288 4.9 57.0 1.0 CD F:GLU357 4.9 58.2 1.0 O2A F:ADP702 5.0 60.2 1.0

M.Hohl, E.J.Banks, M.P.Manley, T.B.K.Le, H.H.Low. Bidirectional Pilus Processing in the Tad Pilus System Motor Cpaf. Nat Commun V. 15 6635 2024.
ISSN: ESSN 2041-1723
PubMed: 39103374
DOI: 10.1038/S41467-024-50280-6