Magnesium in PDB 8rkd: Tada/Cpaf with Amppnp

The binding sites of Magnesium atom in the Tada/Cpaf with Amppnp (pdb code 8rkd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Tada/Cpaf with Amppnp, PDB code: 8rkd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Tada/Cpaf with Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tada/Cpaf with Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg703 b:30.0 occ:1.00 O2B F:ADP702 2.0 64.3 1.0 OG1 F:THR288 2.3 56.4 1.0 HG1 F:THR288 2.6 56.4 1.0 PB F:ADP702 3.2 64.3 1.0 OE1 F:GLU312 3.6 62.6 1.0 CB F:THR288 3.6 56.4 1.0 O3A F:ADP702 3.7 64.3 1.0 O3B F:ADP702 3.8 64.3 1.0 HB F:THR288 3.8 56.4 1.0 OE2 F:GLU312 4.0 62.6 1.0 HG21 F:THR288 4.1 56.4 1.0 CD F:GLU312 4.2 62.6 1.0 HH22 F:ARG217 4.2 62.1 1.0 OE1 F:GLU357 4.2 50.8 1.0 H F:THR288 4.2 56.4 1.0 NH2 F:ARG217 4.3 62.1 1.0 HH21 F:ARG217 4.4 62.1 1.0 CG2 F:THR288 4.4 56.4 1.0 HE3 F:LYS287 4.5 53.0 1.0 O1B F:ADP702 4.5 64.3 1.0 HB2 F:GLU357 4.5 50.8 1.0 CA F:THR288 4.7 56.4 1.0 O2A F:ADP702 4.7 64.3 1.0 N F:THR288 4.7 56.4 1.0 HA F:THR288 4.8 56.4 1.0 HG23 F:THR288 4.8 56.4 1.0 HB2 F:LYS287 4.9 53.0 1.0 PA F:ADP702 4.9 64.3 1.0 CZ F:ARG217 5.0 62.1 1.0 CD F:GLU357 5.0 50.8 1.0

Magnesium binding site 2 out of 2 in the Tada/Cpaf with Amppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tada/Cpaf with Amppnp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg703 b:30.0 occ:1.00 O2B C:ADP702 2.0 64.3 1.0 OG1 C:THR288 2.3 56.4 1.0 HG1 C:THR288 2.6 56.4 1.0 PB C:ADP702 3.3 64.3 1.0 OE1 C:GLU312 3.6 62.6 1.0 CB C:THR288 3.6 56.4 1.0 O3B C:ADP702 3.8 64.3 1.0 HB C:THR288 3.8 56.4 1.0 O3A C:ADP702 3.9 64.3 1.0 OE2 C:GLU312 4.0 62.6 1.0 HG21 C:THR288 4.1 56.4 1.0 CD C:GLU312 4.1 62.6 1.0 HH22 C:ARG217 4.2 62.1 1.0 H C:THR288 4.2 56.4 1.0 OE1 C:GLU357 4.2 50.8 1.0 NH2 C:ARG217 4.3 62.1 1.0 HH21 C:ARG217 4.3 62.1 1.0 CG2 C:THR288 4.4 56.4 1.0 HE3 C:LYS287 4.4 53.0 1.0 O1B C:ADP702 4.5 64.3 1.0 HB2 C:GLU357 4.6 50.8 1.0 CA C:THR288 4.7 56.4 1.0 N C:THR288 4.7 56.4 1.0 HA C:THR288 4.8 56.4 1.0 O2A C:ADP702 4.8 64.3 1.0 HG23 C:THR288 4.8 56.4 1.0 HB2 C:LYS287 4.8 53.0 1.0 CZ C:ARG217 5.0 62.1 1.0 CD C:GLU357 5.0 50.8 1.0

M.Hohl, E.J.Banks, M.P.Manley, T.B.K.Le, H.H.Low. Bidirectional Pilus Processing in the Tad Pilus System Motor Cpaf. Nat Commun V. 15 6635 2024.
ISSN: ESSN 2041-1723
PubMed: 39103374
DOI: 10.1038/S41467-024-50280-6