Magnesium in PDB 8rkt: Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K CAS12K Domain Local- Refinement Map

The structure of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K CAS12K Domain Local- Refinement Map also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K CAS12K Domain Local- Refinement Map (pdb code 8rkt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K CAS12K Domain Local- Refinement Map, PDB code: 8rkt:

Magnesium binding site 1 out of 1 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K CAS12K Domain Local- Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K CAS12K Domain Local- Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg300 b:16.9 occ:1.00 O 1:HOH447 2.0 13.3 1.0 O C:HOH317 2.1 19.6 1.0 O 1:HOH492 2.1 19.8 1.0 O 1:HOH527 2.1 40.1 1.0 OP1 1:A173 2.2 12.3 1.0 OP2 1:C174 2.2 18.3 1.0 P 1:A173 3.6 12.7 1.0 P 1:C174 3.7 11.3 1.0 C5' 1:A173 3.8 12.9 1.0 O5' 1:A173 3.9 17.1 1.0 OE1 C:GLN93 4.1 28.2 1.0 O 1:HOH451 4.3 17.1 1.0 O 1:HOH551 4.4 27.3 1.0 O5' 1:C174 4.4 12.1 1.0 OP1 1:C174 4.4 13.4 1.0 CG C:PRO96 4.5 12.4 1.0 O3' 1:U172 4.5 13.7 1.0 OP2 1:A173 4.6 13.5 1.0 NE2 C:GLN93 4.6 21.0 1.0 O3' 1:A173 4.6 12.7 1.0 CD C:GLN93 4.7 23.6 1.0 CD C:PRO96 4.8 15.3 1.0 O 1:HOH405 4.8 18.8 1.0 C4' 1:A173 4.8 10.8 1.0 CD B:ARG66 5.0 13.3 1.0

F.Tenjo-Castano, N.Sofos, L.S.Stutzke, P.Temperini, A.Fuglsang, T.Pape, P.Mesa, G.Montoya. Conformational Landscape of the Type V-K Crispr-Associated Transposon Integration Assembly. Mol.Cell 2024.
ISSN: ISSN 1097-2765
PubMed: 38834066
DOI: 10.1016/J.MOLCEL.2024.05.005