Magnesium in PDB 8rku: Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Magnesium atom in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map (pdb code 8rku). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map, PDB code: 8rku:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 14 in 8rku

Go back to Magnesium Binding Sites List in 8rku
Magnesium binding site 1 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg301

b:10.8
occ:1.00
 O2B D:ATP302 2.0 10.7 1.0
OG1 D:THR67 2.0 9.4 1.0
O D:HOH401 2.1 12.7 1.0
O D:HOH405 2.1 8.5 1.0
O D:HOH402 2.1 11.7 1.0
O1G D:ATP302 2.5 8.2 1.0
CB D:THR67 3.0 9.3 1.0
PB D:ATP302 3.2 5.5 1.0
PG D:ATP302 3.4 3.6 1.0
O3B D:ATP302 3.4 9.1 1.0
O2G D:ATP302 3.9 9.0 1.0
O3A D:ATP302 3.9 8.4 1.0
N D:THR67 4.0 9.3 1.0
CA D:THR67 4.0 10.8 1.0
CG2 D:THR67 4.0 10.3 1.0
OD2 D:ASP144 4.1 16.9 1.0
OD1 D:ASP144 4.1 15.3 1.0
OE2 D:GLU145 4.2 27.3 1.0
O1A D:ATP302 4.3 11.9 1.0
O1B D:ATP302 4.4 9.1 1.0
CG D:ASP144 4.5 13.3 1.0
PA D:ATP302 4.6 9.6 1.0
CG D:GLU145 4.7 16.6 1.0
O3G D:ATP302 4.7 8.1 1.0
OE2 E:GLU162 4.7 49.7 1.0
O2A D:ATP302 4.8 12.3 1.0
CD D:GLU145 4.8 23.2 1.0
NH2 E:ARG189 4.9 26.6 1.0

Magnesium binding site 2 out of 14 in 8rku

Go back to Magnesium Binding Sites List in 8rku
Magnesium binding site 2 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg301

b:17.8
occ:1.00
 OG1 E:THR67 2.0 14.6 1.0
O E:HOH413 2.1 10.4 1.0
O E:HOH416 2.1 17.4 1.0
O E:HOH401 2.1 28.8 1.0
O1G E:ATP300 2.3 16.4 1.0
O2B E:ATP300 2.4 19.2 1.0
CB E:THR67 3.2 14.7 1.0
PG E:ATP300 3.3 11.7 1.0
O3B E:ATP300 3.4 21.7 1.0
PB E:ATP300 3.5 13.4 1.0
OE2 E:GLU145 3.6 26.8 1.0
O2G E:ATP300 4.0 18.2 1.0
CG2 E:THR67 4.1 10.4 1.0
OD1 E:ASP144 4.1 30.3 1.0
NH2 F:ARG189 4.1 26.3 1.0
O E:HOH424 4.2 25.7 1.0
N E:THR67 4.2 12.8 1.0
CA E:THR67 4.2 14.9 1.0
OD2 E:ASP144 4.2 32.1 1.0
O1A E:ATP300 4.2 17.5 1.0
O3A E:ATP300 4.3 16.2 1.0
OE2 F:GLU162 4.3 50.7 1.0
CG E:GLU145 4.4 23.3 1.0
CD E:GLU145 4.5 22.9 1.0
CG E:ASP144 4.6 22.0 1.0
O3G E:ATP300 4.6 21.9 1.0
O1B E:ATP300 4.6 16.4 1.0
PA E:ATP300 4.7 14.7 1.0

Magnesium binding site 3 out of 14 in 8rku

Go back to Magnesium Binding Sites List in 8rku
Magnesium binding site 3 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg301

b:24.0
occ:1.00
 OG1 F:THR67 2.0 23.1 1.0
O F:HOH407 2.1 19.1 1.0
O F:HOH413 2.1 34.8 1.0
O F:HOH401 2.1 26.8 1.0
O1G F:ATP300 2.3 28.5 1.0
O2B F:ATP300 2.3 18.7 1.0
CB F:THR67 3.0 18.6 1.0
PG F:ATP300 3.3 19.4 1.0
PB F:ATP300 3.3 15.8 1.0
O3B F:ATP300 3.3 21.8 1.0
OE2 F:GLU145 3.8 30.9 1.0
CG2 F:THR67 3.9 14.9 1.0
O2G F:ATP300 3.9 18.2 1.0
CA F:THR67 4.1 18.4 1.0
O3A F:ATP300 4.1 19.6 1.0
O1A F:ATP300 4.1 24.9 1.0
N F:THR67 4.2 19.8 1.0
OD2 F:ASP144 4.2 23.3 1.0
OE2 G:GLU162 4.2 40.6 1.0
OD1 F:ASP144 4.2 25.5 1.0
NH2 G:ARG189 4.3 28.8 1.0
O3G F:ATP300 4.5 21.7 1.0
O1B F:ATP300 4.5 19.2 1.0
PA F:ATP300 4.6 19.5 1.0
CG F:ASP144 4.6 20.7 1.0
OE1 G:GLU162 4.7 49.5 1.0
CD F:GLU145 4.8 29.2 1.0
O2A F:ATP300 4.8 22.5 1.0
CG F:GLU145 4.9 25.4 1.0
CD G:GLU162 4.9 47.1 1.0

Magnesium binding site 4 out of 14 in 8rku

Go back to Magnesium Binding Sites List in 8rku
Magnesium binding site 4 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg301

b:25.5
occ:1.00
 OG1 G:THR67 2.0 21.8 1.0
O G:HOH413 2.1 21.0 1.0
O G:HOH411 2.1 20.7 1.0
O G:HOH406 2.1 28.9 1.0
O2B G:ATP300 2.2 22.9 1.0
O1G G:ATP300 2.4 25.0 1.0
CB G:THR67 3.3 19.6 1.0
PG G:ATP300 3.4 20.6 1.0
PB G:ATP300 3.4 16.0 1.0
O3B G:ATP300 3.5 24.2 1.0
OE2 G:GLU145 3.9 31.9 1.0
O2G G:ATP300 4.0 23.1 1.0
OD1 G:ASP144 4.0 25.2 1.0
CG2 G:THR67 4.1 17.6 1.0
O1A G:ATP300 4.2 23.4 1.0
O3A G:ATP300 4.2 23.3 1.0
OD2 G:ASP144 4.3 25.4 1.0
N G:THR67 4.3 18.4 1.0
CA G:THR67 4.3 17.9 1.0
NH2 H:ARG189 4.4 35.1 1.0
O G:HOH432 4.5 23.4 1.0
OE2 H:GLU162 4.5 50.2 1.0
O1B G:ATP300 4.5 19.3 1.0
CG G:ASP144 4.5 23.1 1.0
O3G G:ATP300 4.7 28.2 1.0
CG G:GLU145 4.7 27.3 1.0
PA G:ATP300 4.7 22.6 1.0
CD G:GLU145 4.7 30.0 1.0
NE2 H:GLN185 5.0 35.7 1.0
OE1 H:GLU162 5.0 60.0 1.0

Magnesium binding site 5 out of 14 in 8rku

Go back to Magnesium Binding Sites List in 8rku
Magnesium binding site 5 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg301

b:32.5
occ:1.00
 O H:HOH402 2.1 19.8 1.0
O H:HOH409 2.1 34.9 1.0
O H:HOH408 2.1 21.4 1.0
OG1 H:THR67 2.2 27.7 1.0
O1G H:ATP300 2.4 31.3 1.0
O2B H:ATP300 2.9 27.7 1.0
OE2 H:GLU145 3.3 39.4 1.0
OD2 H:ASP144 3.3 29.5 1.0
CB H:THR67 3.4 22.2 1.0
PG H:ATP300 3.5 29.2 1.0
O3B H:ATP300 3.9 27.3 1.0
OD1 H:ASP144 3.9 31.1 1.0
CG H:ASP144 4.0 26.5 1.0
PB H:ATP300 4.0 22.3 1.0
CG H:GLU145 4.0 31.4 1.0
O2G H:ATP300 4.0 21.1 1.0
CD H:GLU145 4.1 33.1 1.0
CG2 H:THR67 4.2 17.6 1.0
NH2 I:ARG189 4.3 29.7 1.0
OE2 I:GLU162 4.5 49.8 1.0
CA H:THR67 4.5 20.2 1.0
N H:THR67 4.6 20.6 1.0
O3G H:ATP300 4.8 30.2 1.0
O1A H:ATP300 4.8 28.3 1.0
O3A H:ATP300 4.9 22.1 1.0
OE1 I:GLN185 4.9 24.8 1.0

Magnesium binding site 6 out of 14 in 8rku

Go back to Magnesium Binding Sites List in 8rku
Magnesium binding site 6 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg301

b:32.9
occ:1.00
 O I:HOH415 2.1 26.0 1.0
O I:HOH409 2.1 37.0 1.0
O I:HOH405 2.1 15.4 1.0
OG1 I:THR67 2.2 22.6 1.0
O1G I:ATP300 2.4 33.8 1.0
O2B I:ATP300 2.8 19.8 1.0
OE2 I:GLU145 3.1 39.9 1.0
CB I:THR67 3.5 19.2 1.0
PG I:ATP300 3.5 29.9 1.0
OD2 I:ASP144 3.7 31.0 1.0
O3B I:ATP300 3.8 27.3 1.0
PB I:ATP300 3.9 16.9 1.0
CD I:GLU145 4.0 34.0 1.0
CG I:GLU145 4.0 29.7 1.0
OD1 I:ASP144 4.0 32.5 1.0
O2G I:ATP300 4.0 28.2 1.0
CG2 I:THR67 4.1 17.1 1.0
CG I:ASP144 4.2 27.3 1.0
NH2 J:ARG189 4.3 33.7 1.0
OE2 J:GLU162 4.4 48.4 1.0
CA I:THR67 4.6 17.7 1.0
N I:THR67 4.7 17.9 1.0
O3A I:ATP300 4.7 22.1 1.0
O3G I:ATP300 4.8 32.6 1.0
O1A I:ATP300 4.8 21.6 1.0
OE1 J:GLU162 4.9 47.8 1.0
OE1 J:GLN185 4.9 24.3 1.0

Magnesium binding site 7 out of 14 in 8rku

Go back to Magnesium Binding Sites List in 8rku
Magnesium binding site 7 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg301

b:27.8
occ:1.00
 O J:HOH412 2.1 23.4 1.0
O J:HOH404 2.1 32.9 1.0
O J:HOH411 2.1 17.6 1.0
OG1 J:THR67 2.2 21.9 1.0
O1G J:ATP300 2.5 26.5 1.0
O2B J:ATP300 2.8 22.1 1.0
OE1 J:GLU145 3.3 27.9 1.0
CB J:THR67 3.5 18.8 1.0
PG J:ATP300 3.7 21.1 1.0
O3B J:ATP300 3.9 22.1 1.0
PB J:ATP300 4.0 17.6 1.0
OD2 J:ASP144 4.0 23.8 1.0
CG2 J:THR67 4.0 16.5 1.0
O J:HOH423 4.0 21.4 1.0
CG J:GLU145 4.2 25.2 1.0
CD J:GLU145 4.2 28.2 1.0
OD1 J:ASP144 4.2 25.5 1.0
O2G J:ATP300 4.2 21.6 1.0
NH2 K:ARG189 4.2 42.6 1.0
OE2 K:GLU162 4.3 52.8 1.0
CG J:ASP144 4.4 22.1 1.0
CA J:THR67 4.6 19.1 1.0
O1A J:ATP300 4.7 21.3 1.0
OE1 K:GLN185 4.8 35.8 1.0
O3A J:ATP300 4.8 20.4 1.0
OE1 K:GLU162 4.8 55.0 1.0
N J:THR67 4.8 18.1 1.0
O3G J:ATP300 4.9 23.7 1.0

Magnesium binding site 8 out of 14 in 8rku

Go back to Magnesium Binding Sites List in 8rku
Magnesium binding site 8 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg301

b:29.1
occ:1.00
 OG1 K:THR67 2.0 30.8 1.0
O K:HOH408 2.1 21.2 1.0
O K:HOH412 2.1 22.6 1.0
O K:HOH401 2.1 29.6 1.0
O1G K:ATP300 2.3 32.7 1.0
O2B K:ATP300 2.4 26.9 1.0
CB K:THR67 3.3 26.6 1.0
PG K:ATP300 3.3 29.4 1.0
O3B K:ATP300 3.4 28.4 1.0
PB K:ATP300 3.5 23.2 1.0
OE2 K:GLU145 3.9 31.7 1.0
O2G K:ATP300 3.9 25.3 1.0
OD1 K:ASP144 4.0 35.1 1.0
O K:HOH441 4.1 27.6 1.0
CG2 K:THR67 4.1 22.9 1.0
O1A K:ATP300 4.1 29.7 1.0
NH2 L:ARG189 4.2 31.7 1.0
O3A K:ATP300 4.3 25.3 1.0
OD2 K:ASP144 4.3 27.5 1.0
N K:THR67 4.3 29.1 1.0
CA K:THR67 4.3 27.5 1.0
O3G K:ATP300 4.6 38.2 1.0
CG K:ASP144 4.6 24.7 1.0
OE2 L:GLU162 4.6 37.9 1.0
O1B K:ATP300 4.6 26.7 1.0
PA K:ATP300 4.6 27.2 1.0
CD K:GLU145 4.8 32.7 1.0
O2A K:ATP300 4.9 26.6 1.0
OE1 L:GLU162 4.9 43.6 1.0
CG K:GLU145 4.9 29.4 1.0

Magnesium binding site 9 out of 14 in 8rku

Go back to Magnesium Binding Sites List in 8rku
Magnesium binding site 9 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg301

b:27.7
occ:1.00
 O L:HOH401 2.1 16.1 1.0
O L:HOH417 2.1 26.6 1.0
O L:HOH416 2.1 21.6 1.0
OG1 L:THR67 2.2 25.3 1.0
O1G L:ATP300 2.5 29.8 1.0
O2B L:ATP300 2.8 20.8 1.0
OE2 L:GLU145 3.1 28.3 1.0
CB L:THR67 3.5 20.8 1.0
PG L:ATP300 3.6 26.1 1.0
OD1 L:ASP144 3.7 25.4 1.0
OD2 L:ASP144 3.7 19.6 1.0
O3B L:ATP300 3.9 23.5 1.0
CD L:GLU145 3.9 22.5 1.0
PB L:ATP300 4.0 23.4 1.0
CG L:GLU145 4.0 21.7 1.0
O2G L:ATP300 4.0 24.6 1.0
CG L:ASP144 4.0 20.6 1.0
CG2 L:THR67 4.2 15.6 1.0
NH2 M:ARG189 4.4 29.3 1.0
CA L:THR67 4.6 20.4 1.0
OE2 M:GLU162 4.7 43.4 1.0
N L:THR67 4.7 20.2 1.0
O3G L:ATP300 4.9 34.2 1.0
OE1 M:GLN185 4.9 19.9 1.0
O1A L:ATP300 4.9 28.3 1.0
O3A L:ATP300 4.9 21.1 1.0

Magnesium binding site 10 out of 14 in 8rku

Go back to Magnesium Binding Sites List in 8rku
Magnesium binding site 10 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg301

b:29.9
occ:1.00
 O2B M:ATP300 2.0 26.9 1.0
O M:HOH401 2.1 27.9 1.0
O M:HOH424 2.1 26.2 1.0
O M:HOH406 2.1 44.1 1.0
OG1 M:THR67 2.1 23.9 1.0
O1G M:ATP300 2.4 31.1 1.0
CB M:THR67 3.0 20.5 1.0
PB M:ATP300 3.1 22.4 1.0
O3B M:ATP300 3.2 30.8 1.0
PG M:ATP300 3.3 29.1 1.0
O1A M:ATP300 3.9 24.9 1.0
O3A M:ATP300 3.9 23.9 1.0
CG2 M:THR67 4.0 20.7 1.0
O2G M:ATP300 4.0 28.7 1.0
OE2 M:GLU145 4.1 35.6 1.0
N M:THR67 4.1 20.1 1.0
CA M:THR67 4.1 19.7 1.0
OD1 M:ASP144 4.2 29.4 1.0
O M:HOH429 4.2 19.4 1.0
NH2 N:ARG189 4.3 38.6 1.0
PA M:ATP300 4.3 20.9 1.0
O1B M:ATP300 4.3 25.2 1.0
OD2 M:ASP144 4.4 23.5 1.0
OE2 N:GLU162 4.4 48.5 1.0
O3G M:ATP300 4.5 38.9 1.0
O2A M:ATP300 4.7 27.5 1.0
CG M:ASP144 4.7 23.6 1.0

Reference:

F.Tenjo-Castano, N.Sofos, L.S.Stutzke, P.Temperini, A.Fuglsang, T.Pape, P.Mesa, G.Montoya. Conformational Landscape of the Type V-K Crispr-Associated Transposon Integration Assembly. Mol.Cell 2024.
ISSN: ISSN 1097-2765
PubMed: 38834066
DOI: 10.1016/J.MOLCEL.2024.05.005
Page generated: Fri Oct 4 17:40:30 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy