Magnesium in PDB 8rku: Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map

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>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Magnesium atom in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map (pdb code 8rku). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map, PDB code: 8rku:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg301 b:10.8 occ:1.00 O2B D:ATP302 2.0 10.7 1.0 OG1 D:THR67 2.0 9.4 1.0 O D:HOH401 2.1 12.7 1.0 O D:HOH405 2.1 8.5 1.0 O D:HOH402 2.1 11.7 1.0 O1G D:ATP302 2.5 8.2 1.0 CB D:THR67 3.0 9.3 1.0 PB D:ATP302 3.2 5.5 1.0 PG D:ATP302 3.4 3.6 1.0 O3B D:ATP302 3.4 9.1 1.0 O2G D:ATP302 3.9 9.0 1.0 O3A D:ATP302 3.9 8.4 1.0 N D:THR67 4.0 9.3 1.0 CA D:THR67 4.0 10.8 1.0 CG2 D:THR67 4.0 10.3 1.0 OD2 D:ASP144 4.1 16.9 1.0 OD1 D:ASP144 4.1 15.3 1.0 OE2 D:GLU145 4.2 27.3 1.0 O1A D:ATP302 4.3 11.9 1.0 O1B D:ATP302 4.4 9.1 1.0 CG D:ASP144 4.5 13.3 1.0 PA D:ATP302 4.6 9.6 1.0 CG D:GLU145 4.7 16.6 1.0 O3G D:ATP302 4.7 8.1 1.0 OE2 E:GLU162 4.7 49.7 1.0 O2A D:ATP302 4.8 12.3 1.0 CD D:GLU145 4.8 23.2 1.0 NH2 E:ARG189 4.9 26.6 1.0

Magnesium binding site 2 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg301 b:17.8 occ:1.00 OG1 E:THR67 2.0 14.6 1.0 O E:HOH413 2.1 10.4 1.0 O E:HOH416 2.1 17.4 1.0 O E:HOH401 2.1 28.8 1.0 O1G E:ATP300 2.3 16.4 1.0 O2B E:ATP300 2.4 19.2 1.0 CB E:THR67 3.2 14.7 1.0 PG E:ATP300 3.3 11.7 1.0 O3B E:ATP300 3.4 21.7 1.0 PB E:ATP300 3.5 13.4 1.0 OE2 E:GLU145 3.6 26.8 1.0 O2G E:ATP300 4.0 18.2 1.0 CG2 E:THR67 4.1 10.4 1.0 OD1 E:ASP144 4.1 30.3 1.0 NH2 F:ARG189 4.1 26.3 1.0 O E:HOH424 4.2 25.7 1.0 N E:THR67 4.2 12.8 1.0 CA E:THR67 4.2 14.9 1.0 OD2 E:ASP144 4.2 32.1 1.0 O1A E:ATP300 4.2 17.5 1.0 O3A E:ATP300 4.3 16.2 1.0 OE2 F:GLU162 4.3 50.7 1.0 CG E:GLU145 4.4 23.3 1.0 CD E:GLU145 4.5 22.9 1.0 CG E:ASP144 4.6 22.0 1.0 O3G E:ATP300 4.6 21.9 1.0 O1B E:ATP300 4.6 16.4 1.0 PA E:ATP300 4.7 14.7 1.0

Magnesium binding site 3 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg301 b:24.0 occ:1.00 OG1 F:THR67 2.0 23.1 1.0 O F:HOH407 2.1 19.1 1.0 O F:HOH413 2.1 34.8 1.0 O F:HOH401 2.1 26.8 1.0 O1G F:ATP300 2.3 28.5 1.0 O2B F:ATP300 2.3 18.7 1.0 CB F:THR67 3.0 18.6 1.0 PG F:ATP300 3.3 19.4 1.0 PB F:ATP300 3.3 15.8 1.0 O3B F:ATP300 3.3 21.8 1.0 OE2 F:GLU145 3.8 30.9 1.0 CG2 F:THR67 3.9 14.9 1.0 O2G F:ATP300 3.9 18.2 1.0 CA F:THR67 4.1 18.4 1.0 O3A F:ATP300 4.1 19.6 1.0 O1A F:ATP300 4.1 24.9 1.0 N F:THR67 4.2 19.8 1.0 OD2 F:ASP144 4.2 23.3 1.0 OE2 G:GLU162 4.2 40.6 1.0 OD1 F:ASP144 4.2 25.5 1.0 NH2 G:ARG189 4.3 28.8 1.0 O3G F:ATP300 4.5 21.7 1.0 O1B F:ATP300 4.5 19.2 1.0 PA F:ATP300 4.6 19.5 1.0 CG F:ASP144 4.6 20.7 1.0 OE1 G:GLU162 4.7 49.5 1.0 CD F:GLU145 4.8 29.2 1.0 O2A F:ATP300 4.8 22.5 1.0 CG F:GLU145 4.9 25.4 1.0 CD G:GLU162 4.9 47.1 1.0

Magnesium binding site 4 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg301 b:25.5 occ:1.00 OG1 G:THR67 2.0 21.8 1.0 O G:HOH413 2.1 21.0 1.0 O G:HOH411 2.1 20.7 1.0 O G:HOH406 2.1 28.9 1.0 O2B G:ATP300 2.2 22.9 1.0 O1G G:ATP300 2.4 25.0 1.0 CB G:THR67 3.3 19.6 1.0 PG G:ATP300 3.4 20.6 1.0 PB G:ATP300 3.4 16.0 1.0 O3B G:ATP300 3.5 24.2 1.0 OE2 G:GLU145 3.9 31.9 1.0 O2G G:ATP300 4.0 23.1 1.0 OD1 G:ASP144 4.0 25.2 1.0 CG2 G:THR67 4.1 17.6 1.0 O1A G:ATP300 4.2 23.4 1.0 O3A G:ATP300 4.2 23.3 1.0 OD2 G:ASP144 4.3 25.4 1.0 N G:THR67 4.3 18.4 1.0 CA G:THR67 4.3 17.9 1.0 NH2 H:ARG189 4.4 35.1 1.0 O G:HOH432 4.5 23.4 1.0 OE2 H:GLU162 4.5 50.2 1.0 O1B G:ATP300 4.5 19.3 1.0 CG G:ASP144 4.5 23.1 1.0 O3G G:ATP300 4.7 28.2 1.0 CG G:GLU145 4.7 27.3 1.0 PA G:ATP300 4.7 22.6 1.0 CD G:GLU145 4.7 30.0 1.0 NE2 H:GLN185 5.0 35.7 1.0 OE1 H:GLU162 5.0 60.0 1.0

Magnesium binding site 5 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg301 b:32.5 occ:1.00 O H:HOH402 2.1 19.8 1.0 O H:HOH409 2.1 34.9 1.0 O H:HOH408 2.1 21.4 1.0 OG1 H:THR67 2.2 27.7 1.0 O1G H:ATP300 2.4 31.3 1.0 O2B H:ATP300 2.9 27.7 1.0 OE2 H:GLU145 3.3 39.4 1.0 OD2 H:ASP144 3.3 29.5 1.0 CB H:THR67 3.4 22.2 1.0 PG H:ATP300 3.5 29.2 1.0 O3B H:ATP300 3.9 27.3 1.0 OD1 H:ASP144 3.9 31.1 1.0 CG H:ASP144 4.0 26.5 1.0 PB H:ATP300 4.0 22.3 1.0 CG H:GLU145 4.0 31.4 1.0 O2G H:ATP300 4.0 21.1 1.0 CD H:GLU145 4.1 33.1 1.0 CG2 H:THR67 4.2 17.6 1.0 NH2 I:ARG189 4.3 29.7 1.0 OE2 I:GLU162 4.5 49.8 1.0 CA H:THR67 4.5 20.2 1.0 N H:THR67 4.6 20.6 1.0 O3G H:ATP300 4.8 30.2 1.0 O1A H:ATP300 4.8 28.3 1.0 O3A H:ATP300 4.9 22.1 1.0 OE1 I:GLN185 4.9 24.8 1.0

Magnesium binding site 6 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg301 b:32.9 occ:1.00 O I:HOH415 2.1 26.0 1.0 O I:HOH409 2.1 37.0 1.0 O I:HOH405 2.1 15.4 1.0 OG1 I:THR67 2.2 22.6 1.0 O1G I:ATP300 2.4 33.8 1.0 O2B I:ATP300 2.8 19.8 1.0 OE2 I:GLU145 3.1 39.9 1.0 CB I:THR67 3.5 19.2 1.0 PG I:ATP300 3.5 29.9 1.0 OD2 I:ASP144 3.7 31.0 1.0 O3B I:ATP300 3.8 27.3 1.0 PB I:ATP300 3.9 16.9 1.0 CD I:GLU145 4.0 34.0 1.0 CG I:GLU145 4.0 29.7 1.0 OD1 I:ASP144 4.0 32.5 1.0 O2G I:ATP300 4.0 28.2 1.0 CG2 I:THR67 4.1 17.1 1.0 CG I:ASP144 4.2 27.3 1.0 NH2 J:ARG189 4.3 33.7 1.0 OE2 J:GLU162 4.4 48.4 1.0 CA I:THR67 4.6 17.7 1.0 N I:THR67 4.7 17.9 1.0 O3A I:ATP300 4.7 22.1 1.0 O3G I:ATP300 4.8 32.6 1.0 O1A I:ATP300 4.8 21.6 1.0 OE1 J:GLU162 4.9 47.8 1.0 OE1 J:GLN185 4.9 24.3 1.0

Magnesium binding site 7 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg301 b:27.8 occ:1.00 O J:HOH412 2.1 23.4 1.0 O J:HOH404 2.1 32.9 1.0 O J:HOH411 2.1 17.6 1.0 OG1 J:THR67 2.2 21.9 1.0 O1G J:ATP300 2.5 26.5 1.0 O2B J:ATP300 2.8 22.1 1.0 OE1 J:GLU145 3.3 27.9 1.0 CB J:THR67 3.5 18.8 1.0 PG J:ATP300 3.7 21.1 1.0 O3B J:ATP300 3.9 22.1 1.0 PB J:ATP300 4.0 17.6 1.0 OD2 J:ASP144 4.0 23.8 1.0 CG2 J:THR67 4.0 16.5 1.0 O J:HOH423 4.0 21.4 1.0 CG J:GLU145 4.2 25.2 1.0 CD J:GLU145 4.2 28.2 1.0 OD1 J:ASP144 4.2 25.5 1.0 O2G J:ATP300 4.2 21.6 1.0 NH2 K:ARG189 4.2 42.6 1.0 OE2 K:GLU162 4.3 52.8 1.0 CG J:ASP144 4.4 22.1 1.0 CA J:THR67 4.6 19.1 1.0 O1A J:ATP300 4.7 21.3 1.0 OE1 K:GLN185 4.8 35.8 1.0 O3A J:ATP300 4.8 20.4 1.0 OE1 K:GLU162 4.8 55.0 1.0 N J:THR67 4.8 18.1 1.0 O3G J:ATP300 4.9 23.7 1.0

Magnesium binding site 8 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg301 b:29.1 occ:1.00 OG1 K:THR67 2.0 30.8 1.0 O K:HOH408 2.1 21.2 1.0 O K:HOH412 2.1 22.6 1.0 O K:HOH401 2.1 29.6 1.0 O1G K:ATP300 2.3 32.7 1.0 O2B K:ATP300 2.4 26.9 1.0 CB K:THR67 3.3 26.6 1.0 PG K:ATP300 3.3 29.4 1.0 O3B K:ATP300 3.4 28.4 1.0 PB K:ATP300 3.5 23.2 1.0 OE2 K:GLU145 3.9 31.7 1.0 O2G K:ATP300 3.9 25.3 1.0 OD1 K:ASP144 4.0 35.1 1.0 O K:HOH441 4.1 27.6 1.0 CG2 K:THR67 4.1 22.9 1.0 O1A K:ATP300 4.1 29.7 1.0 NH2 L:ARG189 4.2 31.7 1.0 O3A K:ATP300 4.3 25.3 1.0 OD2 K:ASP144 4.3 27.5 1.0 N K:THR67 4.3 29.1 1.0 CA K:THR67 4.3 27.5 1.0 O3G K:ATP300 4.6 38.2 1.0 CG K:ASP144 4.6 24.7 1.0 OE2 L:GLU162 4.6 37.9 1.0 O1B K:ATP300 4.6 26.7 1.0 PA K:ATP300 4.6 27.2 1.0 CD K:GLU145 4.8 32.7 1.0 O2A K:ATP300 4.9 26.6 1.0 OE1 L:GLU162 4.9 43.6 1.0 CG K:GLU145 4.9 29.4 1.0

Magnesium binding site 9 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg301 b:27.7 occ:1.00 O L:HOH401 2.1 16.1 1.0 O L:HOH417 2.1 26.6 1.0 O L:HOH416 2.1 21.6 1.0 OG1 L:THR67 2.2 25.3 1.0 O1G L:ATP300 2.5 29.8 1.0 O2B L:ATP300 2.8 20.8 1.0 OE2 L:GLU145 3.1 28.3 1.0 CB L:THR67 3.5 20.8 1.0 PG L:ATP300 3.6 26.1 1.0 OD1 L:ASP144 3.7 25.4 1.0 OD2 L:ASP144 3.7 19.6 1.0 O3B L:ATP300 3.9 23.5 1.0 CD L:GLU145 3.9 22.5 1.0 PB L:ATP300 4.0 23.4 1.0 CG L:GLU145 4.0 21.7 1.0 O2G L:ATP300 4.0 24.6 1.0 CG L:ASP144 4.0 20.6 1.0 CG2 L:THR67 4.2 15.6 1.0 NH2 M:ARG189 4.4 29.3 1.0 CA L:THR67 4.6 20.4 1.0 OE2 M:GLU162 4.7 43.4 1.0 N L:THR67 4.7 20.2 1.0 O3G L:ATP300 4.9 34.2 1.0 OE1 M:GLN185 4.9 19.9 1.0 O1A L:ATP300 4.9 28.3 1.0 O3A L:ATP300 4.9 21.1 1.0

Magnesium binding site 10 out of 14 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsc Domain Local-Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ M:Mg301 b:29.9 occ:1.00 O2B M:ATP300 2.0 26.9 1.0 O M:HOH401 2.1 27.9 1.0 O M:HOH424 2.1 26.2 1.0 O M:HOH406 2.1 44.1 1.0 OG1 M:THR67 2.1 23.9 1.0 O1G M:ATP300 2.4 31.1 1.0 CB M:THR67 3.0 20.5 1.0 PB M:ATP300 3.1 22.4 1.0 O3B M:ATP300 3.2 30.8 1.0 PG M:ATP300 3.3 29.1 1.0 O1A M:ATP300 3.9 24.9 1.0 O3A M:ATP300 3.9 23.9 1.0 CG2 M:THR67 4.0 20.7 1.0 O2G M:ATP300 4.0 28.7 1.0 OE2 M:GLU145 4.1 35.6 1.0 N M:THR67 4.1 20.1 1.0 CA M:THR67 4.1 19.7 1.0 OD1 M:ASP144 4.2 29.4 1.0 O M:HOH429 4.2 19.4 1.0 NH2 N:ARG189 4.3 38.6 1.0 PA M:ATP300 4.3 20.9 1.0 O1B M:ATP300 4.3 25.2 1.0 OD2 M:ASP144 4.4 23.5 1.0 OE2 N:GLU162 4.4 48.5 1.0 O3G M:ATP300 4.5 38.9 1.0 O2A M:ATP300 4.7 27.5 1.0 CG M:ASP144 4.7 23.6 1.0

F.Tenjo-Castano, N.Sofos, L.S.Stutzke, P.Temperini, A.Fuglsang, T.Pape, P.Mesa, G.Montoya. Conformational Landscape of the Type V-K Crispr-Associated Transposon Integration Assembly. Mol.Cell 2024.
ISSN: ISSN 1097-2765
PubMed: 38834066
DOI: 10.1016/J.MOLCEL.2024.05.005