Magnesium in PDB 8rkv: Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsb Domain Local-Refinement Map

The binding sites of Magnesium atom in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsb Domain Local-Refinement Map (pdb code 8rkv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsb Domain Local-Refinement Map, PDB code: 8rkv:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsb Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsb Domain Local-Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg600 b:2.0 occ:1.00 OD1 R:ASP205 2.0 89.6 1.0 OD2 R:ASP205 2.1 96.4 1.0 OD2 R:ASP287 2.1 97.7 1.0 CG R:ASP205 2.3 89.7 1.0 O3' 2:DG67 2.5 14.4 1.0 CG R:ASP287 3.4 98.7 1.0 OP2 6:DC60 3.4 53.1 1.0 C3' 2:DG67 3.5 12.1 1.0 CB R:ASP205 3.9 82.2 1.0 O R:HIS206 4.2 91.3 1.0 OD1 R:ASP287 4.2 106.2 1.0 CB R:ASP287 4.2 93.1 1.0 C4' 2:DG67 4.3 14.7 1.0 N R:HIS206 4.4 83.8 1.0 OE2 R:GLU321 4.5 104.1 1.0 CA R:ASP205 4.6 78.1 1.0 NH1 R:ARG311 4.6 98.8 1.0 P 6:DC60 4.8 50.5 1.0 C2' 2:DG67 4.8 12.1 1.0 O3' 6:DA59 4.9 44.2 1.0

Magnesium binding site 2 out of 2 in the Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsb Domain Local-Refinement Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Conformational Landscape of the Type V-K Crispr-Associated Transposonintegration Assembly Cast V-K Tnsb Domain Local-Refinement Map within 5.0Å range: probe atom residue distance (Å) B Occ S:Mg600 b:2.8 occ:1.00 OD1 S:ASP205 2.0 80.0 1.0 O3' 7:DT15 2.1 20.5 1.0 OD2 S:ASP205 2.1 82.7 1.0 OD2 S:ASP287 2.1 100.9 1.0 CG S:ASP205 2.3 79.3 1.0 C3' 7:DT15 2.9 14.7 1.0 CG S:ASP287 3.0 105.3 1.0 CB S:ASP287 3.7 96.6 1.0 CB S:ASP205 3.8 71.5 1.0 C4' 7:DT15 3.9 19.0 1.0 OD1 S:ASP287 3.9 108.9 1.0 C2' 7:DT15 4.2 17.2 1.0 O S:HIS206 4.2 77.5 1.0 C5' 3:DC61 4.3 46.1 1.0 OP2 3:DC61 4.3 57.0 1.0 N S:HIS206 4.4 73.2 1.0 O5' 3:DC61 4.5 47.1 1.0 CA S:ASP205 4.6 70.9 1.0 C5' 7:DT15 4.7 28.8 1.0 CD2 S:HIS206 4.9 87.1 1.0 O4' 7:DT15 5.0 22.2 1.0

F.Tenjo-Castano, N.Sofos, L.S.Stutzke, P.Temperini, A.Fuglsang, T.Pape, P.Mesa, G.Montoya. Conformational Landscape of the Type V-K Crispr-Associated Transposon Integration Assembly. Mol.Cell 2024.
ISSN: ISSN 1097-2765
PubMed: 38834066
DOI: 10.1016/J.MOLCEL.2024.05.005