Magnesium in PDB 8rmq: Influenza Polymerase A/H7N9-4M (Endo(R) | CORE2)

The binding sites of Magnesium atom in the Influenza Polymerase A/H7N9-4M (Endo(R) | CORE2) (pdb code 8rmq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Influenza Polymerase A/H7N9-4M (Endo(R) | CORE2), PDB code: 8rmq:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Influenza Polymerase A/H7N9-4M (Endo(R) | CORE2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Influenza Polymerase A/H7N9-4M (Endo(R) | CORE2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:19.2 occ:1.00 OD2 B:ASP446 2.3 40.8 1.0 OD1 B:ASP446 2.5 30.4 1.0 MG B:MG802 2.6 26.2 1.0 CG B:ASP446 2.7 30.0 1.0 OE1 B:GLU491 3.0 23.9 1.0 HG22 B:THR303 3.3 20.7 1.0 HG23 B:THR303 3.4 21.0 1.0 O B:GLY304 3.4 25.6 1.0 OD1 B:ASP305 3.4 40.4 1.0 HA B:ASP305 3.7 26.0 1.0 CG2 B:THR303 3.8 16.7 1.0 C B:GLY304 3.8 18.2 1.0 HE2 A:LYS664 3.9 21.5 1.0 CD B:GLU491 4.2 29.7 1.0 N B:ASP305 4.2 18.5 1.0 CB B:ASP446 4.2 21.6 1.0 HB2 B:ASP305 4.2 25.1 1.0 HG21 B:THR303 4.2 19.5 1.0 H B:PHE447 4.3 21.9 1.0 CA B:ASP305 4.3 21.9 1.0 H B:GLY304 4.3 20.5 1.0 N B:GLY304 4.3 18.6 1.0 CG B:ASP305 4.4 38.5 1.0 H B:THR493 4.5 24.0 1.0 HA B:PHE492 4.5 22.0 1.0 HA B:ASP446 4.5 29.6 1.0 CB B:ASP305 4.5 21.5 1.0 C B:THR303 4.6 19.6 1.0 HB2 B:ASP446 4.6 27.7 1.0 HB3 B:GLU491 4.6 21.4 1.0 OE2 B:GLU491 4.6 31.7 1.0 CA B:GLY304 4.7 21.7 1.0 O B:PHE447 4.7 16.2 1.0 HB3 B:ASP446 4.7 27.4 1.0 H B:ASP305 4.8 24.9 1.0 O B:GLU491 4.8 25.4 1.0 CE A:LYS664 4.8 24.7 1.0 CA B:ASP446 4.9 30.7 1.0 O B:THR303 4.9 11.8 1.0 N B:PHE447 5.0 23.9 1.0 HA B:THR303 5.0 20.9 1.0

Magnesium binding site 2 out of 2 in the Influenza Polymerase A/H7N9-4M (Endo(R) | CORE2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Influenza Polymerase A/H7N9-4M (Endo(R) | CORE2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:26.2 occ:1.00 OD1 B:ASP446 2.0 30.4 1.0 HG23 B:THR303 2.5 21.0 1.0 MG B:MG801 2.6 19.2 1.0 O B:GLU491 2.6 25.4 1.0 HA B:PHE492 2.7 22.0 1.0 O B:PHE447 3.1 16.2 1.0 CG B:ASP446 3.1 30.0 1.0 H B:GLY304 3.3 20.5 1.0 HD1 B:PHE492 3.3 22.9 1.0 CG2 B:THR303 3.4 16.7 1.0 OE1 B:GLU491 3.4 23.9 1.0 HA B:THR303 3.4 20.9 1.0 C B:GLU491 3.4 18.0 1.0 HG22 B:THR303 3.5 20.7 1.0 CA B:PHE492 3.6 21.5 1.0 O B:GLY304 3.7 25.6 1.0 OD2 B:ASP446 3.7 40.8 1.0 N B:GLY304 3.7 18.6 1.0 H B:PHE447 3.8 21.9 1.0 N B:PHE492 3.9 21.2 1.0 HB2 B:ALA448 3.9 20.9 1.0 C B:PHE447 3.9 12.3 1.0 H B:THR493 3.9 24.0 1.0 HB2 B:PHE492 4.0 22.3 1.0 HG21 B:THR303 4.0 19.5 1.0 CA B:THR303 4.0 18.8 1.0 HB3 B:GLU491 4.0 21.4 1.0 C B:THR303 4.1 19.6 1.0 CD1 B:PHE492 4.1 18.9 1.0 CB B:THR303 4.2 21.7 1.0 HB3 B:ASP446 4.2 27.4 1.0 CB B:PHE492 4.3 23.9 1.0 CD B:GLU491 4.3 29.7 1.0 N B:PHE447 4.3 23.9 1.0 CB B:ASP446 4.3 21.6 1.0 HA B:ALA448 4.3 21.8 1.0 C B:GLY304 4.4 18.2 1.0 N B:THR493 4.6 15.6 1.0 H B:GLU491 4.6 20.0 1.0 CA B:GLU491 4.6 20.6 1.0 N B:ALA448 4.6 17.5 1.0 C B:PHE492 4.6 17.4 1.0 H B:PHE492 4.6 22.6 1.0 CA B:GLY304 4.7 21.7 1.0 CB B:GLU491 4.7 19.6 1.0 CG B:PHE492 4.7 22.3 1.0 CB B:ALA448 4.7 18.0 1.0 OG1 B:THR303 4.7 19.1 1.0 CA B:PHE447 4.7 15.2 1.0 CA B:ALA448 4.8 16.4 1.0 HD2 B:PHE490 4.9 20.0 1.0 OE2 B:GLU491 4.9 31.7 1.0

B.Arragain, T.Krischuns, M.Pelosse, P.Drncova, M.Blackledge, N.Naffakh, S.Cusack. Structures of Influenza A and B Replication Complexes Give Insight Into Avian to Human Host Adaptation and Reveal A Role of ANP32 As An Electrostatic Chaperone For the Apo-Polymerase. Nat Commun V. 15 6910 2024.
ISSN: ESSN 2041-1723
PubMed: 39160148
DOI: 10.1038/S41467-024-51007-3