Magnesium in PDB 8roj: Human Cohesin SMC3-Hd/RAD21-C Complex - Adp-Mg-Bound Conformation

Protein crystallography data

The structure of Human Cohesin SMC3-Hd/RAD21-C Complex - Adp-Mg-Bound Conformation, PDB code: 8roj was solved by M.Vitoria Gomes, C.Romier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.27 / 3.00
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.706, 89.706, 234.645, 90, 90, 90
R / Rfree (%) 19.6 / 26.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Cohesin SMC3-Hd/RAD21-C Complex - Adp-Mg-Bound Conformation (pdb code 8roj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Human Cohesin SMC3-Hd/RAD21-C Complex - Adp-Mg-Bound Conformation, PDB code: 8roj:

Magnesium binding site 1 out of 1 in 8roj

Go back to Magnesium Binding Sites List in 8roj
Magnesium binding site 1 out of 1 in the Human Cohesin SMC3-Hd/RAD21-C Complex - Adp-Mg-Bound Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Cohesin SMC3-Hd/RAD21-C Complex - Adp-Mg-Bound Conformation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2000

b:113.0
occ:1.00
O A:HOH2101 1.8 69.6 1.0
O A:HOH2104 2.0 76.9 1.0
O A:HOH2102 2.1 69.1 1.0
OG A:SER39 2.2 103.0 1.0
O A:HOH2103 2.2 69.9 1.0
O3B A:ADP2001 2.2 66.0 1.0
O1B A:ADP2001 3.0 91.5 1.0
PB A:ADP2001 3.1 73.4 1.0
CB A:SER39 3.2 84.0 1.0
O3A A:ADP2001 3.6 88.6 1.0
N A:SER39 3.9 73.3 1.0
CA A:SER39 4.1 71.0 1.0
OE2 A:GLU1144 4.2 94.0 1.0
O1A A:ADP2001 4.3 78.5 1.0
OE1 A:GLU1144 4.3 95.0 1.0
PA A:ADP2001 4.4 75.8 1.0
O2B A:ADP2001 4.5 55.0 1.0
O2A A:ADP2001 4.6 62.7 1.0
CD A:GLU1144 4.6 89.2 1.0
OD2 A:ASP1143 4.7 100.4 1.0
OD1 A:ASP1143 4.8 94.7 1.0
CB A:LYS38 4.9 53.9 1.0

Reference:

M.Vitoria Gomes, C.Romier. The Cohesin Atpase Cycle Is Mediated By Specific Conformational Dynamics and Interface Plasticity of SMC1A and SMC3 Atpase Domains To Be Published.
Page generated: Fri Oct 4 17:44:49 2024

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