Magnesium in PDB 8s91: Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp

All present enzymatic activity of Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp:
3.6.4.12;

The binding sites of Magnesium atom in the Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp (pdb code 8s91). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp, PDB code: 8s91:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2002 b:33.4 occ:1.00 OG A:SER461 2.2 42.0 1.0 CB A:SER461 2.5 42.0 1.0 OD2 A:ASP518 2.7 63.5 1.0 O1B A:ADP2001 3.3 42.6 1.0 CG A:ASP518 3.6 63.5 1.0 CA A:SER461 3.7 42.0 1.0 OD1 A:ASP518 3.8 63.5 1.0 O A:LYS460 4.4 33.4 1.0 PB A:ADP2001 4.5 42.6 1.0 O1A A:ADP2001 4.5 42.6 1.0 N A:SER461 4.5 42.0 1.0 OH A:TYR476 4.6 69.1 1.0 O3B A:ADP2001 4.7 42.6 1.0 OE1 D:GLU429 4.7 79.3 1.0 O A:SER461 4.7 42.0 1.0 C A:SER461 4.7 42.0 1.0 C A:LYS460 4.8 33.4 1.0 O3A A:ADP2001 5.0 42.6 1.0

Magnesium binding site 2 out of 6 in the Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg2002 b:49.9 occ:1.00 OG B:SER461 2.1 55.0 1.0 OD2 B:ASP518 2.4 67.5 1.0 CB B:SER461 2.5 55.0 1.0 CG B:ASP518 3.4 67.5 1.0 OD1 B:ASP518 3.6 67.5 1.0 O1B B:ADP2001 3.7 77.7 1.0 CA B:SER461 3.7 55.0 1.0 O B:LYS460 4.4 39.9 1.0 OH B:TYR476 4.5 76.4 1.0 N B:SER461 4.6 55.0 1.0 O B:SER461 4.6 55.0 1.0 C B:SER461 4.7 55.0 1.0 O1A B:ADP2001 4.7 77.7 1.0 CB B:ASP518 4.7 67.5 1.0 C B:LYS460 4.9 39.9 1.0 PB B:ADP2001 4.9 77.7 1.0

Magnesium binding site 3 out of 6 in the Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg2002 b:47.4 occ:1.00 OG C:SER461 2.1 49.2 1.0 CB C:SER461 2.5 49.2 1.0 OD2 C:ASP518 2.5 67.6 1.0 CG C:ASP518 3.3 67.6 1.0 OD1 C:ASP518 3.5 67.6 1.0 CA C:SER461 3.5 49.2 1.0 O1B C:ADP2001 3.6 42.6 1.0 OE1 F:GLU429 4.1 83.8 1.0 O C:LYS460 4.2 34.7 1.0 OH C:TYR476 4.5 77.0 1.0 N C:SER461 4.5 49.2 1.0 O C:SER461 4.5 49.2 1.0 C C:SER461 4.6 49.2 1.0 C C:LYS460 4.7 34.7 1.0 CB C:ASP518 4.7 67.6 1.0 O1A C:ADP2001 4.8 42.6 1.0 PB C:ADP2001 4.8 42.6 1.0 O3B C:ADP2001 4.9 42.6 1.0

Magnesium binding site 4 out of 6 in the Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg2002 b:59.1 occ:1.00 O1B D:ADP2001 2.0 61.5 1.0 O2B D:ADP2001 2.1 61.5 1.0 PB D:ADP2001 2.4 61.5 1.0 O3A D:ADP2001 3.2 61.5 1.0 O3B D:ADP2001 3.8 61.5 1.0 CB D:SER359 4.0 74.6 1.0 O1A D:ADP2001 4.1 61.5 1.0 PA D:ADP2001 4.3 61.5 1.0 OG D:SER359 4.6 74.6 1.0 NH2 B:ARG586 4.8 54.5 1.0 CA D:SER359 4.9 74.6 1.0 N D:SER359 5.0 74.6 1.0

Magnesium binding site 5 out of 6 in the Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg2002 b:64.1 occ:1.00 O1B E:ADP2001 2.0 67.7 1.0 O2B E:ADP2001 2.2 67.7 1.0 PB E:ADP2001 2.4 67.7 1.0 O3A E:ADP2001 3.2 67.7 1.0 O3B E:ADP2001 3.9 67.7 1.0 NE2 E:GLN415 4.1 101.6 1.0 CB E:SER359 4.1 73.6 1.0 O1A E:ADP2001 4.2 67.7 1.0 PA E:ADP2001 4.4 67.7 1.0 NH2 C:ARG586 4.5 61.2 1.0 OD2 E:ASP414 4.5 102.4 1.0 OG E:SER359 4.7 73.6 1.0 OD1 E:ASP414 4.7 102.4 1.0

Magnesium binding site 6 out of 6 in the Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg2002 b:62.9 occ:1.00 O1B F:ADP2001 2.1 62.4 1.0 O3B F:ADP2001 2.2 62.4 1.0 PB F:ADP2001 2.5 62.4 1.0 O3A F:ADP2001 3.2 62.4 1.0 CB F:SER359 3.9 69.7 1.0 O2B F:ADP2001 3.9 62.4 1.0 O1A F:ADP2001 4.0 62.4 1.0 PA F:ADP2001 4.3 62.4 1.0 OG F:SER359 4.5 69.7 1.0 OD2 F:ASP414 4.5 106.4 1.0 OD1 F:ASP414 4.7 106.4 1.0 NE2 F:GLN415 4.8 104.3 1.0 NH2 A:ARG586 4.8 53.0 1.0 CA F:SER359 4.9 69.7 1.0 N F:SER359 4.9 69.7 1.0

D.R.Mckinzey, C.Li, Y.Gao, M.A.Trakselis. Specificity, Activity, and Structure of the MCM8/9 Helicase To Be Published.