Magnesium in PDB 8s94: Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp

Enzymatic activity of Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp

All present enzymatic activity of Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp:
3.6.4.12;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp (pdb code 8s94). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp, PDB code: 8s94:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 8s94

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Magnesium binding site 1 out of 6 in the Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2002

b:26.0
occ:1.00
 OD2 A:ASP518 2.4 29.0 1.0
OG A:SER461 2.5 20.6 1.0
CB A:SER461 2.7 20.6 1.0
CG A:ASP518 3.3 29.0 1.0
OD1 A:ASP518 3.4 29.0 1.0
O2B A:ADP2001 3.5 21.8 1.0
CA A:SER461 3.9 20.6 1.0
O A:LYS460 4.3 18.6 1.0
OE1 D:GLU429 4.4 47.4 1.0
OH A:TYR476 4.6 33.5 1.0
PB A:ADP2001 4.6 21.8 1.0
O3B A:ADP2001 4.6 21.8 1.0
N A:SER461 4.7 20.6 1.0
CB A:ASP518 4.7 29.0 1.0
O2A A:ADP2001 4.7 21.8 1.0
OE1 D:GLN433 4.8 51.2 1.0
C A:LYS460 4.9 18.6 1.0
C A:SER461 5.0 20.6 1.0

Magnesium binding site 2 out of 6 in 8s94

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Magnesium binding site 2 out of 6 in the Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2002

b:32.1
occ:1.00
 O3B D:ADP2001 2.7 34.2 1.0
O2B D:ADP2001 3.1 34.2 1.0
OD2 D:ASP414 3.3 52.7 1.0
PB D:ADP2001 3.4 34.2 1.0
CB D:SER359 3.8 34.6 1.0
OD1 D:ASP414 3.9 52.7 1.0
O3A D:ADP2001 3.9 34.2 1.0
CG D:ASP414 4.0 52.7 1.0
OG D:SER359 4.2 34.6 1.0
O2A D:ADP2001 4.7 34.2 1.0
CA D:SER359 4.7 34.6 1.0
O1B D:ADP2001 4.8 34.2 1.0
N D:SER359 4.9 34.6 1.0

Magnesium binding site 3 out of 6 in 8s94

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Magnesium binding site 3 out of 6 in the Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg2002

b:23.3
occ:1.00
 OD2 C:ASP518 2.4 31.9 1.0
OG C:SER461 2.5 21.0 1.0
CB C:SER461 2.7 21.0 1.0
CG C:ASP518 3.2 31.9 1.0
OD1 C:ASP518 3.3 31.9 1.0
O2B C:ADP2001 3.6 17.7 1.0
CA C:SER461 3.8 21.0 1.0
O C:LYS460 4.3 18.8 1.0
OE2 F:GLU429 4.4 57.9 1.0
O3B C:ADP2001 4.6 17.7 1.0
N C:SER461 4.6 21.0 1.0
PB C:ADP2001 4.6 17.7 1.0
OH C:TYR476 4.6 33.6 1.0
CB C:ASP518 4.7 31.9 1.0
O2A C:ADP2001 4.7 17.7 1.0
C C:LYS460 4.8 18.8 1.0
C C:SER461 4.9 21.0 1.0

Magnesium binding site 4 out of 6 in 8s94

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Magnesium binding site 4 out of 6 in the Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg2002

b:30.6
occ:1.00
 O3B F:ADP2001 2.9 32.5 1.0
O2B F:ADP2001 3.1 32.5 1.0
OD2 F:ASP414 3.3 48.5 1.0
PB F:ADP2001 3.5 32.5 1.0
CB F:SER359 3.5 35.0 1.0
OG F:SER359 4.0 35.0 1.0
OD1 F:ASP414 4.0 48.5 1.0
O3A F:ADP2001 4.0 32.5 1.0
CG F:ASP414 4.0 48.5 1.0
CA F:SER359 4.5 35.0 1.0
O2A F:ADP2001 4.5 32.5 1.0
N F:SER359 4.7 35.0 1.0
O1B F:ADP2001 4.9 32.5 1.0
PA F:ADP2001 5.0 32.5 1.0

Magnesium binding site 5 out of 6 in 8s94

Go back to Magnesium Binding Sites List in 8s94
Magnesium binding site 5 out of 6 in the Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg2002

b:25.3
occ:1.00
 OD2 B:ASP518 2.4 30.2 1.0
OG B:SER461 2.5 20.0 1.0
CB B:SER461 2.6 20.0 1.0
CG B:ASP518 3.3 30.2 1.0
OD1 B:ASP518 3.5 30.2 1.0
O2B B:ADP2001 3.5 21.8 1.0
CA B:SER461 3.9 20.0 1.0
O B:LYS460 4.3 16.8 1.0
O2A B:ADP2001 4.5 21.8 1.0
N B:SER461 4.6 20.0 1.0
PB B:ADP2001 4.7 21.8 1.0
CB B:ASP518 4.7 30.2 1.0
OH B:TYR476 4.8 32.9 1.0
O3B B:ADP2001 4.8 21.8 1.0
C B:LYS460 4.9 16.8 1.0
OE1 E:GLN433 4.9 58.3 1.0
C B:SER461 5.0 20.0 1.0

Magnesium binding site 6 out of 6 in 8s94

Go back to Magnesium Binding Sites List in 8s94
Magnesium binding site 6 out of 6 in the Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of C-Terminal Domains of Walker B Mutated MCM8/9 Heterohexamer Complex with Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg2002

b:30.4
occ:1.00
 O3B E:ADP2001 2.7 35.6 1.0
O2B E:ADP2001 3.1 35.6 1.0
PB E:ADP2001 3.3 35.6 1.0
OD2 E:ASP414 3.5 50.9 1.0
CB E:SER359 3.8 35.9 1.0
O3A E:ADP2001 3.9 35.6 1.0
OD1 E:ASP414 4.1 50.9 1.0
CG E:ASP414 4.1 50.9 1.0
OG E:SER359 4.3 35.9 1.0
O2A E:ADP2001 4.5 35.6 1.0
CA E:SER359 4.7 35.9 1.0
O1B E:ADP2001 4.8 35.6 1.0
N E:SER359 4.9 35.9 1.0
PA E:ADP2001 4.9 35.6 1.0

Reference:

D.R.Mckinzey, C.Li, Y.Gao, M.A.Trakselis. Specificity, Activity, and Structure of the MCM8/9 Helicase To Be Published.
Page generated: Fri Jul 28 01:51:14 2023

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