Magnesium in PDB 8sbf: Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi

The structure of Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi, PDB code: 8sbf was solved by C.Momany, M.Nune, J.C.Brondani, D.Afful, E.Neidle, N.R.Galloway, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.45 / 2.29
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	106.597, 109.69, 110.268, 90, 90, 90
R / Rfree (%)	21.1 / 25.8

The structure of Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi also contains other interesting chemical elements:

Sodium

(Na)

3 atoms

The binding sites of Magnesium atom in the Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi (pdb code 8sbf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi, PDB code: 8sbf:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:69.8 occ:1.00 O A:HOH568 2.3 69.5 1.0 OD1 C:ASP103 2.4 51.7 1.0 O C:HOH535 2.8 66.2 1.0 OD1 A:ASP103 2.8 59.9 1.0 CG C:ASP103 3.1 60.0 1.0 OD2 C:ASP103 3.2 47.5 1.0 HE2 C:HIS224 3.5 67.8 1.0 HE2 A:HIS224 3.8 74.5 1.0 O A:HOH544 3.8 55.1 1.0 CG A:ASP103 3.9 61.2 1.0 NE2 C:HIS224 3.9 56.4 1.0 HD12 C:LEU99 4.2 82.8 1.0 OD2 A:ASP103 4.2 53.2 1.0 NE2 A:HIS224 4.4 62.0 1.0 CD2 C:HIS224 4.5 55.1 1.0 CB C:ASP103 4.5 58.5 1.0 HD2 C:HIS224 4.5 66.2 1.0 HD11 C:LEU99 4.6 82.8 1.0 HB3 C:ASP103 4.7 70.3 1.0 CE1 C:HIS224 4.7 54.6 1.0 HA C:ASP103 4.7 62.4 1.0 HD11 A:LEU99 4.7 78.8 1.0 CD1 C:LEU99 4.7 68.9 1.0 HD13 C:LEU99 4.7 82.8 1.0 HA A:ASP103 4.8 59.6 1.0 O C:HOH522 4.8 69.9 1.0 OE1 C:GLU226 4.8 62.7 1.0 HE1 C:HIS224 4.9 65.6 1.0 HD2 A:HIS224 4.9 70.3 1.0 HD12 A:LEU99 5.0 78.8 1.0

Magnesium binding site 2 out of 4 in the Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:90.2 occ:1.00 O C:HOH514 2.2 79.7 1.0 HG1 C:THR266 2.7 112.7 1.0 OG1 C:THR266 3.2 93.8 1.0 OE2 C:GLU264 3.3 69.9 1.0 OE1 C:GLU164 3.5 85.2 1.0 OE2 C:GLU164 3.6 106.1 1.0 CD C:GLU164 3.9 94.2 1.0 CD C:GLU264 4.2 89.0 1.0 OE1 C:GLU264 4.5 89.4 1.0 CB C:THR266 4.5 73.5 1.0 HB C:THR266 4.5 88.3 1.0 H C:LEU265 4.7 75.9 1.0 H C:THR266 4.8 91.3 1.0

Magnesium binding site 3 out of 4 in the Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg404 b:85.3 occ:1.00 OE2 B:GLU264 2.8 83.1 1.0 O B:HOH555 3.0 79.6 1.0 OG1 B:THR266 3.2 74.5 1.0 OE1 B:GLU264 3.3 95.3 1.0 CD B:GLU264 3.4 91.0 1.0 HG1 B:THR266 3.7 89.5 1.0 H B:THR266 4.1 72.2 1.0 HB B:THR266 4.1 77.0 1.0 O B:HOH506 4.2 71.5 1.0 CB B:THR266 4.3 64.1 1.0 H B:LEU265 4.3 98.1 1.0 HA B:GLU264 4.4 86.6 1.0 N B:THR266 4.8 60.0 1.0 CG B:GLU264 4.8 85.1 1.0 HG3 B:GLU264 5.0 102.2 1.0

Magnesium binding site 4 out of 4 in the Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Full-Length Structure of the Lysr-Type Transcriptional Regulator, ACIAD0746, From Acinetobacter Baylyi within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg405 b:58.6 occ:1.00 O B:HOH578 2.1 72.2 1.0 O B:HOH538 2.3 56.1 1.0 O B:HOH594 2.3 79.4 1.0 OD2 B:ASP43 2.7 53.2 1.0 OD1 B:ASP43 2.8 51.1 1.0 CG B:ASP43 3.1 47.0 1.0 HH12 B:ARG2 3.4 70.9 1.0 NH1 B:ARG2 4.3 59.0 1.0 HH22 B:ARG2 4.3 68.4 1.0 O B:ASP43 4.6 44.8 1.0 CB B:ASP43 4.6 44.4 1.0 HH11 B:ARG2 4.7 70.9 1.0 HB3 B:ASP43 5.0 53.4 1.0

C.Momany, M.Nune, J.C.Brondani, D.Afful, E.Neidle, N.R.Galloway. Finr, A Lysr-Type Transcriptional Regulator Involved in Sulfur Homeostasis with Homologs in Diverse Microorganisms To Be Published.