Magnesium in PDB 8sbq: Fphe, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases E, Fluorophosphonate JB101 Bound

Protein crystallography data

The structure of Fphe, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases E, Fluorophosphonate JB101 Bound, PDB code: 8sbq was solved by M.Fellner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.09 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.936, 74.574, 73.862, 90, 91.53, 90
R / Rfree (%) 16.6 / 18.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Fphe, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases E, Fluorophosphonate JB101 Bound (pdb code 8sbq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Fphe, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases E, Fluorophosphonate JB101 Bound, PDB code: 8sbq:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 8sbq

Go back to Magnesium Binding Sites List in 8sbq
Magnesium binding site 1 out of 3 in the Fphe, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases E, Fluorophosphonate JB101 Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fphe, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases E, Fluorophosphonate JB101 Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:27.4
occ:0.58
O A:HOH600 2.0 43.1 1.0
OD1 A:ASN273 2.1 29.2 1.0
O A:HOH534 2.2 29.0 1.0
CG A:ASN273 3.3 27.7 1.0
ND2 A:ASN273 4.0 39.8 1.0
O A:HOH429 4.2 38.2 1.0
O A:ASP269 4.4 26.8 1.0
N A:ASN273 4.4 25.0 1.0
CA A:ASN273 4.5 28.6 1.0
CB A:ASN273 4.5 27.5 1.0
C A:LEU272 5.0 25.9 1.0

Magnesium binding site 2 out of 3 in 8sbq

Go back to Magnesium Binding Sites List in 8sbq
Magnesium binding site 2 out of 3 in the Fphe, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases E, Fluorophosphonate JB101 Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Fphe, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases E, Fluorophosphonate JB101 Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:29.3
occ:0.72
O A:HOH620 2.2 39.4 1.0
OD2 A:ASP136 2.3 24.3 1.0
CG A:ASP136 3.4 22.7 1.0
O A:HOH450 3.4 34.8 1.0
OD1 A:ASP136 3.9 27.0 1.0
NE1 A:TRP140 4.1 23.2 1.0
CB A:ASP136 4.6 21.9 1.0
CZ2 A:TRP140 4.8 24.2 1.0
O B:HOH602 4.8 46.7 1.0
CE2 A:TRP140 4.8 23.0 1.0

Magnesium binding site 3 out of 3 in 8sbq

Go back to Magnesium Binding Sites List in 8sbq
Magnesium binding site 3 out of 3 in the Fphe, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases E, Fluorophosphonate JB101 Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Fphe, Staphylococcus Aureus Fluorophosphonate-Binding Serine Hydrolases E, Fluorophosphonate JB101 Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg302

b:21.4
occ:0.79
O B:HOH596 2.0 28.4 1.0
NE2 B:HIS149 2.1 29.9 1.0
O B:HOH446 2.1 26.8 1.0
O B:HOH449 2.1 25.4 1.0
CE1 B:HIS149 3.0 30.4 1.0
CD2 B:HIS149 3.2 26.3 1.0
O B:HOH613 4.0 35.1 1.0
OG1 B:THR153 4.1 30.6 1.0
ND1 B:HIS149 4.1 31.2 1.0
OE1 B:GLU157 4.2 45.2 1.0
CG B:HIS149 4.3 29.9 1.0
OE2 B:GLU157 4.3 53.7 1.0
OE2 B:GLU154 4.5 35.6 1.0
CG B:GLU154 4.5 33.7 1.0
OH B:TYR191 4.6 47.7 1.0
CD B:GLU157 4.6 46.2 1.0
O B:HOH611 4.8 37.5 1.0

Reference:

M.Fellner, M.Fellner. N/A N/A.
Page generated: Fri Oct 4 19:20:08 2024

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