Magnesium in PDB 8sgc: Cct G Beta 5 Complex Closed State 2

Other elements in 8sgc:

The structure of Cct G Beta 5 Complex Closed State 2 also contains other interesting chemical elements:

Fluorine (F) 48 atoms
Aluminium (Al) 16 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Cct G Beta 5 Complex Closed State 2 (pdb code 8sgc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Cct G Beta 5 Complex Closed State 2, PDB code: 8sgc:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in 8sgc

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Magnesium binding site 1 out of 16 in the Cct G Beta 5 Complex Closed State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cct G Beta 5 Complex Closed State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:100.0
occ:1.00
O3A A:ADP601 2.1 104.0 1.0
OD1 A:ASP88 2.1 103.8 1.0
F1 A:AF3603 2.4 107.2 1.0
O3B A:ADP601 2.4 104.0 1.0
PB A:ADP601 2.7 104.0 1.0
CG A:ASP88 3.1 103.8 1.0
O2A A:ADP601 3.2 104.0 1.0
PA A:ADP601 3.2 104.0 1.0
O2B A:ADP601 3.3 104.0 1.0
OD2 A:ASP88 3.3 103.8 1.0
AL A:AF3603 3.5 107.2 1.0
F2 A:AF3603 4.0 107.2 1.0
O1B A:ADP601 4.0 104.0 1.0
O5' A:ADP601 4.0 104.0 1.0
N A:GLY89 4.1 102.5 1.0
NZ A:LYS159 4.1 102.2 1.0
O1A A:ADP601 4.3 104.0 1.0
CB A:ASP88 4.4 103.8 1.0
O A:SER155 4.5 104.0 1.0
F3 A:AF3603 4.6 107.2 1.0
CA A:ASP88 4.7 103.8 1.0
CA A:GLY89 4.9 102.5 1.0
OD2 A:ASP394 4.9 102.7 1.0
C A:ASP88 4.9 103.8 1.0

Magnesium binding site 2 out of 16 in 8sgc

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Magnesium binding site 2 out of 16 in the Cct G Beta 5 Complex Closed State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cct G Beta 5 Complex Closed State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:103.5
occ:1.00
F1 B:AF3603 2.0 101.8 1.0
O3A B:ADP601 2.0 100.4 1.0
OD1 B:ASP97 2.1 100.8 1.0
O2A B:ADP601 2.2 100.4 1.0
OD2 B:ASP97 2.6 100.8 1.0
PA B:ADP601 2.6 100.4 1.0
CG B:ASP97 2.6 100.8 1.0
AL B:AF3603 3.4 101.8 1.0
PB B:ADP601 3.4 100.4 1.0
O5' B:ADP601 3.5 100.4 1.0
O B:THR166 3.6 97.8 1.0
O2B B:ADP601 3.8 100.4 1.0
O3B B:ADP601 3.9 100.4 1.0
O1A B:ADP601 3.9 100.4 1.0
CB B:ASP97 4.1 100.8 1.0
F3 B:AF3603 4.2 101.8 1.0
CG2 B:THR166 4.2 97.8 1.0
CA B:THR166 4.3 97.8 1.0
C B:THR166 4.4 97.8 1.0
CE B:LYS170 4.5 97.4 1.0
O1B B:ADP601 4.5 100.4 1.0
NZ B:LYS170 4.5 97.4 1.0
C5' B:ADP601 4.8 100.4 1.0
CB B:THR166 4.8 97.8 1.0
F2 B:AF3603 4.8 101.8 1.0
CA B:ASP97 4.9 100.8 1.0
O B:THR165 5.0 98.7 1.0

Magnesium binding site 3 out of 16 in 8sgc

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Magnesium binding site 3 out of 16 in the Cct G Beta 5 Complex Closed State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cct G Beta 5 Complex Closed State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:100.5
occ:1.00
F2 D:AF3603 2.0 102.7 1.0
OD1 D:ASP104 2.1 100.8 1.0
O3A D:ADP601 2.1 102.4 1.0
O2A D:ADP601 2.3 102.4 1.0
PA D:ADP601 2.7 102.4 1.0
CG D:ASP104 2.7 100.8 1.0
OD2 D:ASP104 2.7 100.8 1.0
PB D:ADP601 3.4 102.4 1.0
O5' D:ADP601 3.4 102.4 1.0
O3B D:ADP601 3.7 102.4 1.0
O2B D:ADP601 3.8 102.4 1.0
AL D:AF3603 3.8 102.7 1.0
NZ D:LYS174 4.0 100.0 1.0
O1A D:ADP601 4.0 102.4 1.0
CB D:ASP104 4.2 100.8 1.0
O D:SER170 4.2 101.2 1.0
N D:GLY105 4.3 98.7 1.0
OG D:SER173 4.4 101.3 1.0
O1B D:ADP601 4.5 102.4 1.0
CA D:SER170 4.6 101.2 1.0
C5' D:ADP601 4.7 102.4 1.0
CA D:ASP104 4.8 100.8 1.0
F1 D:AF3603 4.8 102.7 1.0
OG D:SER170 4.8 101.2 1.0
C D:SER170 4.9 101.2 1.0
OD2 D:ASP407 4.9 100.7 1.0
F3 D:AF3603 5.0 102.7 1.0

Magnesium binding site 4 out of 16 in 8sgc

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Magnesium binding site 4 out of 16 in the Cct G Beta 5 Complex Closed State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cct G Beta 5 Complex Closed State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg602

b:101.5
occ:1.00
F1 E:AF3603 2.0 97.7 1.0
O3A E:ADP601 2.1 100.7 1.0
OD1 E:ASP104 2.1 103.1 1.0
O2A E:ADP601 2.3 100.7 1.0
PA E:ADP601 2.7 100.7 1.0
CG E:ASP104 2.9 103.1 1.0
OD2 E:ASP104 3.1 103.1 1.0
PB E:ADP601 3.4 100.7 1.0
O5' E:ADP601 3.5 100.7 1.0
AL E:AF3603 3.6 97.7 1.0
O2B E:ADP601 3.8 100.7 1.0
O3B E:ADP601 3.8 100.7 1.0
O1A E:ADP601 4.0 100.7 1.0
O E:THR172 4.2 97.9 1.0
N E:GLY105 4.2 97.4 1.0
F3 E:AF3603 4.2 97.7 1.0
OG E:SER175 4.3 97.3 1.0
CB E:ASP104 4.4 103.1 1.0
NZ E:LYS176 4.4 97.5 1.0
O1B E:ADP601 4.5 100.7 1.0
CG2 E:THR172 4.5 97.9 1.0
C5' E:ADP601 4.7 100.7 1.0
CA E:THR172 4.8 97.9 1.0
CA E:ASP104 4.8 103.1 1.0
C E:THR172 4.9 97.9 1.0
CA E:GLY105 4.9 97.4 1.0
F2 E:AF3603 4.9 97.7 1.0

Magnesium binding site 5 out of 16 in 8sgc

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Magnesium binding site 5 out of 16 in the Cct G Beta 5 Complex Closed State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cct G Beta 5 Complex Closed State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg602

b:102.5
occ:1.00
F2 G:AF3603 2.0 108.5 1.0
O2A G:ADP601 2.1 102.5 1.0
O3B G:ADP601 2.1 102.5 1.0
PB G:ADP601 3.0 102.5 1.0
O2B G:ADP601 3.1 102.5 1.0
PA G:ADP601 3.4 102.5 1.0
OD2 G:ASP93 3.6 106.5 1.0
O3A G:ADP601 3.6 102.5 1.0
CB G:ASP93 3.7 106.5 1.0
AL G:AF3603 3.7 108.5 1.0
CG G:ASP93 4.0 106.5 1.0
C5' G:ADP601 4.1 102.5 1.0
N G:GLY94 4.1 103.3 1.0
O5' G:ADP601 4.3 102.5 1.0
OG1 G:THR162 4.4 102.6 1.0
O G:SER159 4.4 99.8 1.0
O1B G:ADP601 4.4 102.5 1.0
O1A G:ADP601 4.5 102.5 1.0
CA G:ASP93 4.7 106.5 1.0
F1 G:AF3603 4.7 108.5 1.0
F3 G:AF3603 4.8 108.5 1.0
OD2 G:ASP393 4.8 107.0 1.0
CA G:GLY94 4.9 103.3 1.0
C G:ASP93 4.9 106.5 1.0

Magnesium binding site 6 out of 16 in 8sgc

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Magnesium binding site 6 out of 16 in the Cct G Beta 5 Complex Closed State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cct G Beta 5 Complex Closed State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg602

b:97.2
occ:1.00
F2 H:AF3603 2.0 99.2 1.0
OD1 H:ASP92 2.1 102.0 1.0
O3A H:ADP601 2.2 97.6 1.0
O2A H:ADP601 2.6 97.6 1.0
CG H:ASP92 2.7 102.0 1.0
OD2 H:ASP92 2.8 102.0 1.0
PA H:ADP601 3.0 97.6 1.0
PB H:ADP601 3.5 97.6 1.0
O2B H:ADP601 3.6 97.6 1.0
AL H:AF3603 3.7 99.2 1.0
C5' H:ADP601 3.8 97.6 1.0
O5' H:ADP601 3.9 97.6 1.0
O3B H:ADP601 3.9 97.6 1.0
O H:ALA162 4.0 98.0 1.0
CB H:ASP92 4.2 102.0 1.0
O1A H:ADP601 4.2 97.6 1.0
NZ H:LYS166 4.4 98.1 1.0
N H:GLY93 4.6 97.0 1.0
O1B H:ADP601 4.6 97.6 1.0
CA H:ALA162 4.6 98.0 1.0
F1 H:AF3603 4.7 99.2 1.0
C H:ALA162 4.7 98.0 1.0
CA H:ASP92 4.9 102.0 1.0
F3 H:AF3603 4.9 99.2 1.0

Magnesium binding site 7 out of 16 in 8sgc

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Magnesium binding site 7 out of 16 in the Cct G Beta 5 Complex Closed State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cct G Beta 5 Complex Closed State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Mg602

b:104.5
occ:1.00
O2A Q:ADP601 2.0 102.7 1.0
OD1 Q:ASP99 2.1 104.0 1.0
OD2 Q:ASP99 2.1 104.0 1.0
O2B Q:ADP601 2.2 102.7 1.0
CG Q:ASP99 2.4 104.0 1.0
NZ Q:LYS171 2.5 102.7 1.0
O3B Q:ADP601 2.5 102.7 1.0
PB Q:ADP601 2.8 102.7 1.0
PA Q:ADP601 3.3 102.7 1.0
O3A Q:ADP601 3.5 102.7 1.0
CB Q:ASP99 3.8 104.0 1.0
CE Q:LYS171 3.9 102.7 1.0
AL Q:AF3603 4.1 106.1 1.0
O1B Q:ADP601 4.2 102.7 1.0
N Q:GLY100 4.2 100.8 1.0
F3 Q:AF3603 4.3 106.1 1.0
C5' Q:ADP601 4.3 102.7 1.0
F1 Q:AF3603 4.3 106.1 1.0
O5' Q:ADP601 4.3 102.7 1.0
F2 Q:AF3603 4.3 106.1 1.0
O1A Q:ADP601 4.4 102.7 1.0
OD2 Q:ASP394 4.4 105.0 1.0
CA Q:ASP99 4.5 104.0 1.0
OG Q:SER170 4.5 104.5 1.0
CD Q:LYS171 4.6 102.7 1.0
CB Q:SER170 4.6 104.5 1.0
O Q:SER167 4.6 102.3 1.0
C Q:ASP99 4.9 104.0 1.0

Magnesium binding site 8 out of 16 in 8sgc

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Magnesium binding site 8 out of 16 in the Cct G Beta 5 Complex Closed State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cct G Beta 5 Complex Closed State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Mg602

b:104.8
occ:1.00
O2A Z:ADP601 2.0 103.0 1.0
OD1 Z:ASP90 2.0 103.2 1.0
O2B Z:ADP601 2.1 103.0 1.0
NZ Z:LYS159 2.2 103.0 1.0
O3B Z:ADP601 2.3 103.0 1.0
PB Z:ADP601 2.6 103.0 1.0
OD2 Z:ASP90 2.6 103.2 1.0
CG Z:ASP90 2.6 103.2 1.0
PA Z:ADP601 3.2 103.0 1.0
O3A Z:ADP601 3.3 103.0 1.0
CE Z:LYS159 3.5 103.0 1.0
AL Z:AF3603 3.7 108.2 1.0
F1 Z:AF3603 4.0 108.2 1.0
O1B Z:ADP601 4.0 103.0 1.0
CB Z:ASP90 4.1 103.2 1.0
O1A Z:ADP601 4.2 103.0 1.0
F3 Z:AF3603 4.2 108.2 1.0
N Z:GLY91 4.3 102.5 1.0
F2 Z:AF3603 4.3 108.2 1.0
O5' Z:ADP601 4.3 103.0 1.0
OG1 Z:THR158 4.4 104.7 1.0
CA Z:ASP90 4.7 103.2 1.0
CD Z:LYS159 4.7 103.0 1.0
OD2 Z:ASP393 4.9 107.2 1.0

Magnesium binding site 9 out of 16 in 8sgc

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Magnesium binding site 9 out of 16 in the Cct G Beta 5 Complex Closed State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cct G Beta 5 Complex Closed State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg602

b:101.0
occ:1.00
O3A a:ADP601 2.1 105.4 1.0
OD1 a:ASP88 2.3 103.3 1.0
O1B a:ADP601 2.5 105.4 1.0
F1 a:AF3603 2.7 106.2 1.0
PB a:ADP601 2.8 105.4 1.0
CG a:ASP88 3.1 103.3 1.0
OD2 a:ASP88 3.2 103.3 1.0
PA a:ADP601 3.3 105.4 1.0
O1A a:ADP601 3.4 105.4 1.0
O2B a:ADP601 3.6 105.4 1.0
AL a:AF3603 3.9 106.2 1.0
O5' a:ADP601 4.0 105.4 1.0
O3B a:ADP601 4.0 105.4 1.0
O a:SER155 4.2 103.3 1.0
N a:GLY89 4.2 102.0 1.0
NZ a:LYS159 4.3 103.6 1.0
O2A a:ADP601 4.5 105.4 1.0
CB a:ASP88 4.5 103.3 1.0
CA a:SER155 4.8 103.3 1.0
F3 a:AF3603 4.9 106.2 1.0
CA a:ASP88 4.9 103.3 1.0
F2 a:AF3603 4.9 106.2 1.0
CA a:GLY89 5.0 102.0 1.0
C a:SER155 5.0 103.3 1.0

Magnesium binding site 10 out of 16 in 8sgc

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Magnesium binding site 10 out of 16 in the Cct G Beta 5 Complex Closed State 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cct G Beta 5 Complex Closed State 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg602

b:102.3
occ:1.00
O3A b:ADP601 2.0 100.7 1.0
OD1 b:ASP97 2.1 102.6 1.0
F1 b:AF3603 2.2 104.2 1.0
O1A b:ADP601 2.2 100.7 1.0
OD2 b:ASP97 2.2 102.6 1.0
CG b:ASP97 2.4 102.6 1.0
PA b:ADP601 2.6 100.7 1.0
PB b:ADP601 3.5 100.7 1.0
O5' b:ADP601 3.5 100.7 1.0
NZ b:LYS170 3.7 97.8 1.0
AL b:AF3603 3.7 104.2 1.0
O2B b:ADP601 3.8 100.7 1.0
O b:THR166 3.8 96.5 1.0
CB b:ASP97 3.9 102.6 1.0
O1B b:ADP601 3.9 100.7 1.0
O2A b:ADP601 3.9 100.7 1.0
CG2 b:THR166 4.2 96.5 1.0
CA b:THR166 4.4 96.5 1.0
O3B b:ADP601 4.5 100.7 1.0
F3 b:AF3603 4.5 104.2 1.0
C b:THR166 4.6 96.5 1.0
CA b:ASP97 4.7 102.6 1.0
C5' b:ADP601 4.8 100.7 1.0
N b:GLY98 4.8 97.8 1.0
CB b:THR166 4.9 96.5 1.0
F2 b:AF3603 5.0 104.2 1.0

Reference:

S.Wang, M.Sass, M.B.Willardson, P.S.Shen. Visualizing the Chaperone-Mediated Folding Trajectory of the G Protein Beta 5 Beta-Propeller Structure To Be Published.
Page generated: Fri Oct 4 19:34:10 2024

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