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Magnesium in PDB 8shd: Cct G Beta 5 Complex Closed State 10

Other elements in 8shd:

The structure of Cct G Beta 5 Complex Closed State 10 also contains other interesting chemical elements:

Aluminium (Al) 16 atoms
Fluorine (F) 48 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Cct G Beta 5 Complex Closed State 10 (pdb code 8shd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Cct G Beta 5 Complex Closed State 10, PDB code: 8shd:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in 8shd

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Magnesium binding site 1 out of 16 in the Cct G Beta 5 Complex Closed State 10


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cct G Beta 5 Complex Closed State 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:75.9
occ:1.00
O3A A:ADP601 2.0 82.3 1.0
F1 A:AF3603 2.1 81.4 1.0
OD1 A:ASP88 2.4 80.4 1.0
O3B A:ADP601 2.5 82.3 1.0
PB A:ADP601 2.8 82.3 1.0
PA A:ADP601 3.3 82.3 1.0
CG A:ASP88 3.3 80.4 1.0
O2A A:ADP601 3.4 82.3 1.0
AL A:AF3603 3.5 81.4 1.0
OD2 A:ASP88 3.5 80.4 1.0
O2B A:ADP601 3.6 82.3 1.0
NZ A:LYS159 3.8 79.4 1.0
O1B A:ADP601 4.0 82.3 1.0
O5' A:ADP601 4.1 82.3 1.0
N A:GLY89 4.3 78.8 1.0
O A:SER155 4.4 83.0 1.0
O1A A:ADP601 4.4 82.3 1.0
F3 A:AF3603 4.5 81.4 1.0
F2 A:AF3603 4.6 81.4 1.0
OG A:SER155 4.7 83.0 1.0
CB A:ASP88 4.7 80.4 1.0
OD2 A:ASP394 4.8 81.5 1.0
CA A:SER155 4.9 83.0 1.0
CA A:ASP88 5.0 80.4 1.0

Magnesium binding site 2 out of 16 in 8shd

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Magnesium binding site 2 out of 16 in the Cct G Beta 5 Complex Closed State 10


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cct G Beta 5 Complex Closed State 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:76.0
occ:1.00
F1 B:AF3603 1.9 77.6 1.0
O2A B:ADP601 2.1 76.9 1.0
OD1 B:ASP97 2.1 75.8 1.0
O3B B:ADP601 2.2 76.9 1.0
OD2 B:ASP97 2.5 75.8 1.0
CG B:ASP97 2.6 75.8 1.0
PA B:ADP601 3.0 76.9 1.0
PB B:ADP601 3.2 76.9 1.0
O3A B:ADP601 3.2 76.9 1.0
O5' B:ADP601 3.4 76.9 1.0
O2B B:ADP601 3.6 76.9 1.0
AL B:AF3603 3.7 77.6 1.0
O B:THR166 4.0 75.8 1.0
CB B:ASP97 4.1 75.8 1.0
O1A B:ADP601 4.5 76.9 1.0
CG2 B:THR166 4.5 75.8 1.0
O1B B:ADP601 4.5 76.9 1.0
F3 B:AF3603 4.6 77.6 1.0
CA B:THR166 4.6 75.8 1.0
CE B:LYS170 4.7 75.2 1.0
C5' B:ADP601 4.7 76.9 1.0
N B:GLY98 4.7 73.6 1.0
CA B:ASP97 4.8 75.8 1.0
F2 B:AF3603 4.8 77.6 1.0
C B:THR166 4.8 75.8 1.0
OD2 B:ASP392 5.0 78.7 1.0

Magnesium binding site 3 out of 16 in 8shd

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Magnesium binding site 3 out of 16 in the Cct G Beta 5 Complex Closed State 10


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cct G Beta 5 Complex Closed State 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:80.1
occ:1.00
F2 D:AF3603 1.9 80.4 1.0
O3A D:ADP601 2.0 80.8 1.0
OD1 D:ASP104 2.0 79.6 1.0
O2A D:ADP601 2.4 80.8 1.0
OD2 D:ASP104 2.7 79.6 1.0
CG D:ASP104 2.7 79.6 1.0
PA D:ADP601 2.7 80.8 1.0
PB D:ADP601 3.3 80.8 1.0
O5' D:ADP601 3.5 80.8 1.0
O2B D:ADP601 3.6 80.8 1.0
O3B D:ADP601 3.7 80.8 1.0
AL D:AF3603 3.7 80.4 1.0
NZ D:LYS174 3.9 79.7 1.0
O1A D:ADP601 4.1 80.8 1.0
O D:SER170 4.2 80.0 1.0
CB D:ASP104 4.2 79.6 1.0
N D:GLY105 4.4 77.7 1.0
OG D:SER173 4.4 80.9 1.0
O1B D:ADP601 4.5 80.8 1.0
CA D:SER170 4.6 80.0 1.0
F1 D:AF3603 4.7 80.4 1.0
CA D:ASP104 4.8 79.6 1.0
C5' D:ADP601 4.8 80.8 1.0
OD2 D:ASP407 4.8 78.8 1.0
C D:SER170 4.8 80.0 1.0
F3 D:AF3603 4.9 80.4 1.0

Magnesium binding site 4 out of 16 in 8shd

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Magnesium binding site 4 out of 16 in the Cct G Beta 5 Complex Closed State 10


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cct G Beta 5 Complex Closed State 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg602

b:78.9
occ:1.00
F1 E:AF3603 2.0 78.1 1.0
O3A E:ADP601 2.0 78.8 1.0
OD1 E:ASP104 2.1 78.1 1.0
O2A E:ADP601 2.6 78.8 1.0
PA E:ADP601 2.9 78.8 1.0
CG E:ASP104 3.1 78.1 1.0
PB E:ADP601 3.3 78.8 1.0
OD2 E:ASP104 3.3 78.1 1.0
O3B E:ADP601 3.5 78.8 1.0
O2B E:ADP601 3.6 78.8 1.0
O5' E:ADP601 3.7 78.8 1.0
AL E:AF3603 3.7 78.1 1.0
N E:GLY105 4.1 74.9 1.0
O E:THR172 4.2 78.8 1.0
O1A E:ADP601 4.2 78.8 1.0
NZ E:LYS176 4.3 75.9 1.0
OG E:SER175 4.4 76.4 1.0
CB E:ASP104 4.4 78.1 1.0
CG2 E:THR172 4.5 78.8 1.0
O1B E:ADP601 4.5 78.8 1.0
F3 E:AF3603 4.5 78.1 1.0
CA E:GLY105 4.8 74.9 1.0
CA E:THR172 4.8 78.8 1.0
CA E:ASP104 4.8 78.1 1.0
C5' E:ADP601 4.9 78.8 1.0
F2 E:AF3603 4.9 78.1 1.0
C E:ASP104 4.9 78.1 1.0
C E:THR172 4.9 78.8 1.0
OD2 E:ASP404 5.0 76.5 1.0

Magnesium binding site 5 out of 16 in 8shd

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Magnesium binding site 5 out of 16 in the Cct G Beta 5 Complex Closed State 10


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cct G Beta 5 Complex Closed State 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg602

b:82.8
occ:1.00
F2 G:AF3603 2.0 84.0 1.0
O2A G:ADP601 2.1 80.7 1.0
O3B G:ADP601 2.1 80.7 1.0
PB G:ADP601 3.1 80.7 1.0
O2B G:ADP601 3.2 80.7 1.0
PA G:ADP601 3.4 80.7 1.0
OD2 G:ASP93 3.5 81.1 1.0
CB G:ASP93 3.6 81.1 1.0
AL G:AF3603 3.7 84.0 1.0
O3A G:ADP601 3.7 80.7 1.0
CG G:ASP93 3.9 81.1 1.0
C5' G:ADP601 4.1 80.7 1.0
N G:GLY94 4.2 79.2 1.0
OG1 G:THR162 4.3 80.1 1.0
O G:SER159 4.3 80.1 1.0
O5' G:ADP601 4.3 80.7 1.0
O1B G:ADP601 4.5 80.7 1.0
O1A G:ADP601 4.6 80.7 1.0
F3 G:AF3603 4.7 84.0 1.0
F1 G:AF3603 4.7 84.0 1.0
CA G:ASP93 4.8 81.1 1.0
CA G:GLY94 5.0 79.2 1.0
C G:ASP93 5.0 81.1 1.0

Magnesium binding site 6 out of 16 in 8shd

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Magnesium binding site 6 out of 16 in the Cct G Beta 5 Complex Closed State 10


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cct G Beta 5 Complex Closed State 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg602

b:83.6
occ:1.00
F2 H:AF3603 2.0 82.0 1.0
OD1 H:ASP92 2.1 80.9 1.0
O3A H:ADP601 2.2 81.2 1.0
O2A H:ADP601 2.7 81.2 1.0
OD2 H:ASP92 2.7 80.9 1.0
CG H:ASP92 2.7 80.9 1.0
PA H:ADP601 3.1 81.2 1.0
PB H:ADP601 3.5 81.2 1.0
AL H:AF3603 3.6 82.0 1.0
O3B H:ADP601 3.7 81.2 1.0
O2B H:ADP601 3.9 81.2 1.0
O H:ALA162 3.9 78.1 1.0
C5' H:ADP601 4.0 81.2 1.0
O5' H:ADP601 4.0 81.2 1.0
CB H:ASP92 4.2 80.9 1.0
O1A H:ADP601 4.2 81.2 1.0
CA H:ALA162 4.4 78.1 1.0
F1 H:AF3603 4.5 82.0 1.0
N H:GLY93 4.6 77.3 1.0
C H:ALA162 4.6 78.1 1.0
NZ H:LYS166 4.7 78.6 1.0
O1B H:ADP601 4.7 81.2 1.0
CA H:ASP92 4.9 80.9 1.0
CB H:ALA162 4.9 78.1 1.0
F3 H:AF3603 5.0 82.0 1.0

Magnesium binding site 7 out of 16 in 8shd

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Magnesium binding site 7 out of 16 in the Cct G Beta 5 Complex Closed State 10


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cct G Beta 5 Complex Closed State 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Mg602

b:82.3
occ:1.00
O2A Q:ADP601 2.0 80.2 1.0
O2B Q:ADP601 2.1 80.2 1.0
OD2 Q:ASP99 2.1 82.0 1.0
OD1 Q:ASP99 2.2 82.0 1.0
CG Q:ASP99 2.4 82.0 1.0
O3B Q:ADP601 2.6 80.2 1.0
PB Q:ADP601 2.7 80.2 1.0
PA Q:ADP601 3.3 80.2 1.0
O3A Q:ADP601 3.5 80.2 1.0
NZ Q:LYS171 3.5 82.0 1.0
CB Q:ASP99 3.9 82.0 1.0
F2 Q:AF3603 3.9 80.3 1.0
AL Q:AF3603 4.0 80.3 1.0
O1B Q:ADP601 4.1 80.2 1.0
F1 Q:AF3603 4.2 80.3 1.0
N Q:GLY100 4.2 78.5 1.0
C5' Q:ADP601 4.3 80.2 1.0
O1A Q:ADP601 4.3 80.2 1.0
O5' Q:ADP601 4.3 80.2 1.0
OD2 Q:ASP394 4.4 82.3 1.0
F3 Q:AF3603 4.5 80.3 1.0
OG Q:SER170 4.6 81.4 1.0
CA Q:ASP99 4.6 82.0 1.0
CB Q:SER170 4.6 81.4 1.0
O Q:SER167 4.6 81.6 1.0
C Q:ASP99 4.9 82.0 1.0
CE Q:LYS171 5.0 82.0 1.0

Magnesium binding site 8 out of 16 in 8shd

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Magnesium binding site 8 out of 16 in the Cct G Beta 5 Complex Closed State 10


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cct G Beta 5 Complex Closed State 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Mg602

b:79.7
occ:1.00
OD1 Z:ASP90 2.0 81.7 1.0
O2A Z:ADP601 2.1 81.1 1.0
O2B Z:ADP601 2.1 81.1 1.0
O3B Z:ADP601 2.4 81.1 1.0
PB Z:ADP601 2.7 81.1 1.0
CG Z:ASP90 2.8 81.7 1.0
OD2 Z:ASP90 3.0 81.7 1.0
PA Z:ADP601 3.2 81.1 1.0
O3A Z:ADP601 3.4 81.1 1.0
CE Z:LYS159 3.5 81.1 1.0
NZ Z:LYS159 3.6 81.1 1.0
AL Z:AF3603 3.9 83.7 1.0
O1B Z:ADP601 4.1 81.1 1.0
F1 Z:AF3603 4.1 83.7 1.0
OG1 Z:THR158 4.2 81.9 1.0
O1A Z:ADP601 4.3 81.1 1.0
F3 Z:AF3603 4.3 83.7 1.0
N Z:GLY91 4.3 79.8 1.0
CB Z:ASP90 4.3 81.7 1.0
O5' Z:ADP601 4.4 81.1 1.0
F2 Z:AF3603 4.7 83.7 1.0
CA Z:ASP90 4.8 81.7 1.0
CD Z:LYS159 4.9 81.1 1.0

Magnesium binding site 9 out of 16 in 8shd

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Magnesium binding site 9 out of 16 in the Cct G Beta 5 Complex Closed State 10


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cct G Beta 5 Complex Closed State 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg602

b:84.0
occ:1.00
O3A a:ADP601 2.0 85.3 1.0
F1 a:AF3603 2.4 82.4 1.0
O1B a:ADP601 2.4 85.3 1.0
OD1 a:ASP88 2.4 82.6 1.0
PB a:ADP601 2.7 85.3 1.0
PA a:ADP601 3.2 85.3 1.0
O1A a:ADP601 3.2 85.3 1.0
O2B a:ADP601 3.3 85.3 1.0
CG a:ASP88 3.4 82.6 1.0
AL a:AF3603 3.6 82.4 1.0
OD2 a:ASP88 3.7 82.6 1.0
NZ a:LYS159 3.9 80.8 1.0
O3B a:ADP601 4.0 85.3 1.0
O5' a:ADP601 4.0 85.3 1.0
N a:GLY89 4.2 81.5 1.0
O2A a:ADP601 4.3 85.3 1.0
O a:SER155 4.3 84.4 1.0
OD2 a:ASP394 4.6 80.6 1.0
F3 a:AF3603 4.6 82.4 1.0
CB a:ASP88 4.7 82.6 1.0
F2 a:AF3603 4.7 82.4 1.0
CA a:ASP88 4.9 82.6 1.0
CE a:LYS159 4.9 80.8 1.0
OG a:SER158 5.0 82.8 1.0

Magnesium binding site 10 out of 16 in 8shd

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Magnesium binding site 10 out of 16 in the Cct G Beta 5 Complex Closed State 10


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cct G Beta 5 Complex Closed State 10 within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg602

b:76.9
occ:1.00
O3A b:ADP601 2.0 77.6 1.0
F1 b:AF3603 2.0 79.2 1.0
OD1 b:ASP97 2.1 78.5 1.0
O1A b:ADP601 2.3 77.6 1.0
OD2 b:ASP97 2.4 78.5 1.0
CG b:ASP97 2.5 78.5 1.0
PA b:ADP601 2.7 77.6 1.0
PB b:ADP601 3.4 77.6 1.0
O5' b:ADP601 3.5 77.6 1.0
AL b:AF3603 3.6 79.2 1.0
O2B b:ADP601 3.7 77.6 1.0
O1B b:ADP601 3.7 77.6 1.0
O b:THR166 3.8 76.1 1.0
O2A b:ADP601 4.0 77.6 1.0
CB b:ASP97 4.0 78.5 1.0
F3 b:AF3603 4.3 79.2 1.0
CG2 b:THR166 4.3 76.1 1.0
CA b:THR166 4.5 76.1 1.0
O3B b:ADP601 4.5 77.6 1.0
CE b:LYS170 4.6 76.2 1.0
C b:THR166 4.6 76.1 1.0
CA b:ASP97 4.7 78.5 1.0
N b:GLY98 4.8 77.2 1.0
C5' b:ADP601 4.8 77.6 1.0
CB b:THR166 5.0 76.1 1.0

Reference:

S.Wang, M.Sass, M.B.Willardson, P.S.Shen. Visualizing the Chaperone-Mediated Folding Trajectory of the G Protein Beta 5 Beta-Propeller Structure To Be Published.
Page generated: Thu Dec 28 10:13:35 2023

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