Magnesium in PDB 8shf: Cct-G Beta 5 Complex Closed State 7

Other elements in 8shf:

The structure of Cct-G Beta 5 Complex Closed State 7 also contains other interesting chemical elements:

Aluminium (Al) 16 atoms
Fluorine (F) 48 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Cct-G Beta 5 Complex Closed State 7 (pdb code 8shf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Cct-G Beta 5 Complex Closed State 7, PDB code: 8shf:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in 8shf

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Magnesium binding site 1 out of 16 in the Cct-G Beta 5 Complex Closed State 7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cct-G Beta 5 Complex Closed State 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:88.0
occ:1.00
O3A A:ADP601 2.0 89.8 1.0
O3B A:ADP601 2.2 89.8 1.0
OD1 A:ASP88 2.2 89.6 1.0
F1 A:AF3603 2.5 91.3 1.0
PB A:ADP601 2.5 89.8 1.0
O2B A:ADP601 3.1 89.8 1.0
CG A:ASP88 3.2 89.6 1.0
PA A:ADP601 3.3 89.8 1.0
O2A A:ADP601 3.4 89.8 1.0
OD2 A:ASP88 3.5 89.6 1.0
AL A:AF3603 3.6 91.3 1.0
NZ A:LYS159 3.6 87.2 1.0
O1B A:ADP601 3.9 89.8 1.0
N A:GLY89 4.1 88.8 1.0
O5' A:ADP601 4.2 89.8 1.0
O1A A:ADP601 4.3 89.8 1.0
OD2 A:ASP394 4.5 89.8 1.0
CB A:ASP88 4.5 89.6 1.0
F3 A:AF3603 4.6 91.3 1.0
F2 A:AF3603 4.6 91.3 1.0
CA A:ASP88 4.8 89.6 1.0
CA A:GLY89 4.8 88.8 1.0
CE A:LYS159 4.9 87.2 1.0
O A:HOH702 4.9 85.3 1.0
O A:SER155 4.9 89.0 1.0
OG A:SER158 5.0 90.0 1.0
C A:ASP88 5.0 89.6 1.0

Magnesium binding site 2 out of 16 in 8shf

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Magnesium binding site 2 out of 16 in the Cct-G Beta 5 Complex Closed State 7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cct-G Beta 5 Complex Closed State 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:92.6
occ:1.00
O3A B:ADP601 2.0 87.8 1.0
OD1 B:ASP97 2.1 87.7 1.0
OD2 B:ASP97 2.1 87.7 1.0
F1 B:AF3603 2.1 90.1 1.0
O2A B:ADP601 2.2 87.8 1.0
CG B:ASP97 2.3 87.7 1.0
PA B:ADP601 2.6 87.8 1.0
PB B:ADP601 3.3 87.8 1.0
O5' B:ADP601 3.4 87.8 1.0
AL B:AF3603 3.6 90.1 1.0
O2B B:ADP601 3.7 87.8 1.0
O3B B:ADP601 3.7 87.8 1.0
O B:THR166 3.8 83.2 1.0
CB B:ASP97 3.8 87.7 1.0
O1A B:ADP601 3.9 87.8 1.0
CG2 B:THR166 4.2 83.2 1.0
CA B:THR166 4.4 83.2 1.0
O1B B:ADP601 4.4 87.8 1.0
F3 B:AF3603 4.5 90.1 1.0
C B:THR166 4.5 83.2 1.0
CE B:LYS170 4.6 84.5 1.0
NZ B:LYS170 4.6 84.5 1.0
C5' B:ADP601 4.7 87.8 1.0
CA B:ASP97 4.7 87.7 1.0
N B:GLY98 4.8 84.7 1.0
CB B:THR166 4.8 83.2 1.0
F2 B:AF3603 4.9 90.1 1.0
OD2 B:ASP392 5.0 90.7 1.0

Magnesium binding site 3 out of 16 in 8shf

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Magnesium binding site 3 out of 16 in the Cct-G Beta 5 Complex Closed State 7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cct-G Beta 5 Complex Closed State 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:89.2
occ:1.00
O3A D:ADP601 2.0 89.5 1.0
OD1 D:ASP104 2.1 90.7 1.0
F2 D:AF3603 2.1 90.2 1.0
O2A D:ADP601 2.3 89.5 1.0
PA D:ADP601 2.6 89.5 1.0
CG D:ASP104 2.7 90.7 1.0
OD2 D:ASP104 2.8 90.7 1.0
PB D:ADP601 3.3 89.5 1.0
O5' D:ADP601 3.3 89.5 1.0
O3B D:ADP601 3.6 89.5 1.0
O2B D:ADP601 3.7 89.5 1.0
AL D:AF3603 3.9 90.2 1.0
O1A D:ADP601 4.0 89.5 1.0
NZ D:LYS174 4.0 89.9 1.0
O D:SER170 4.1 86.8 1.0
CB D:ASP104 4.2 90.7 1.0
N D:GLY105 4.3 87.3 1.0
O1B D:ADP601 4.4 89.5 1.0
CA D:SER170 4.5 86.8 1.0
OG D:SER173 4.6 89.8 1.0
C5' D:ADP601 4.6 89.5 1.0
CA D:ASP104 4.8 90.7 1.0
C D:SER170 4.8 86.8 1.0
OG D:SER170 4.8 86.8 1.0
F1 D:AF3603 4.8 90.2 1.0
OD2 D:ASP407 4.9 89.3 1.0

Magnesium binding site 4 out of 16 in 8shf

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Magnesium binding site 4 out of 16 in the Cct-G Beta 5 Complex Closed State 7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cct-G Beta 5 Complex Closed State 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg602

b:89.0
occ:1.00
F1 E:AF3603 2.0 87.7 1.0
O3A E:ADP601 2.0 86.9 1.0
OD1 E:ASP104 2.1 89.1 1.0
O2A E:ADP601 2.6 86.9 1.0
PA E:ADP601 2.8 86.9 1.0
CG E:ASP104 2.8 89.1 1.0
OD2 E:ASP104 2.9 89.1 1.0
PB E:ADP601 3.2 86.9 1.0
O2B E:ADP601 3.4 86.9 1.0
O5' E:ADP601 3.4 86.9 1.0
AL E:AF3603 3.5 87.7 1.0
O3B E:ADP601 3.7 86.9 1.0
N E:GLY105 4.1 85.6 1.0
O1A E:ADP601 4.2 86.9 1.0
F3 E:AF3603 4.2 87.7 1.0
CB E:ASP104 4.3 89.1 1.0
O E:THR172 4.4 86.2 1.0
O1B E:ADP601 4.4 86.9 1.0
C5' E:ADP601 4.6 86.9 1.0
NZ E:LYS176 4.7 84.6 1.0
OG E:SER175 4.7 85.5 1.0
CG2 E:THR172 4.7 86.2 1.0
CA E:GLY105 4.8 85.6 1.0
F2 E:AF3603 4.8 87.7 1.0
CA E:ASP104 4.8 89.1 1.0
CA E:THR172 4.9 86.2 1.0
C E:ASP104 4.9 89.1 1.0

Magnesium binding site 5 out of 16 in 8shf

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Magnesium binding site 5 out of 16 in the Cct-G Beta 5 Complex Closed State 7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cct-G Beta 5 Complex Closed State 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg602

b:87.7
occ:1.00
F2 G:AF3603 2.0 96.4 1.0
O2A G:ADP601 2.0 87.4 1.0
O3B G:ADP601 2.1 87.4 1.0
PB G:ADP601 3.0 87.4 1.0
O2B G:ADP601 3.1 87.4 1.0
OD2 G:ASP93 3.3 91.0 1.0
PA G:ADP601 3.4 87.4 1.0
O3A G:ADP601 3.6 87.4 1.0
AL G:AF3603 3.7 96.4 1.0
CB G:ASP93 3.7 91.0 1.0
CG G:ASP93 3.8 91.0 1.0
N G:GLY94 4.0 87.7 1.0
C5' G:ADP601 4.0 87.4 1.0
O5' G:ADP601 4.2 87.4 1.0
OG1 G:THR162 4.3 84.6 1.0
O G:SER159 4.3 84.5 1.0
O1B G:ADP601 4.4 87.4 1.0
O1A G:ADP601 4.5 87.4 1.0
F3 G:AF3603 4.7 96.4 1.0
F1 G:AF3603 4.7 96.4 1.0
CA G:GLY94 4.8 87.7 1.0
CA G:ASP93 4.8 91.0 1.0
C G:ASP93 4.8 91.0 1.0
OD1 G:ASP93 5.0 91.0 1.0

Magnesium binding site 6 out of 16 in 8shf

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Magnesium binding site 6 out of 16 in the Cct-G Beta 5 Complex Closed State 7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cct-G Beta 5 Complex Closed State 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg602

b:89.6
occ:1.00
F2 H:AF3603 2.1 90.1 1.0
O3A H:ADP601 2.1 89.1 1.0
OD1 H:ASP92 2.1 87.2 1.0
O2A H:ADP601 2.4 89.1 1.0
PA H:ADP601 2.8 89.1 1.0
CG H:ASP92 3.1 87.2 1.0
AL H:AF3603 3.2 90.1 1.0
OD2 H:ASP92 3.3 87.2 1.0
PB H:ADP601 3.5 89.1 1.0
O3B H:ADP601 3.6 89.1 1.0
O1A H:ADP601 3.8 89.1 1.0
O H:ALA162 4.0 85.6 1.0
F1 H:AF3603 4.0 90.1 1.0
O5' H:ADP601 4.0 89.1 1.0
O2B H:ADP601 4.1 89.1 1.0
NZ H:LYS166 4.2 87.5 1.0
C5' H:ADP601 4.2 89.1 1.0
N H:GLY93 4.4 85.2 1.0
CB H:ASP92 4.4 87.2 1.0
F3 H:AF3603 4.5 90.1 1.0
O1B H:ADP601 4.5 89.1 1.0
OD2 H:ASP391 4.6 86.6 1.0
CE H:LYS166 4.8 87.5 1.0
C H:ALA162 4.9 85.6 1.0
CA H:ASP92 4.9 87.2 1.0
CA H:ALA162 4.9 85.6 1.0

Magnesium binding site 7 out of 16 in 8shf

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Magnesium binding site 7 out of 16 in the Cct-G Beta 5 Complex Closed State 7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cct-G Beta 5 Complex Closed State 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Mg602

b:86.8
occ:1.00
O2A Q:ADP601 2.1 87.9 1.0
O2B Q:ADP601 2.1 87.9 1.0
OD2 Q:ASP99 2.1 89.8 1.0
OD1 Q:ASP99 2.1 89.8 1.0
CG Q:ASP99 2.4 89.8 1.0
O3B Q:ADP601 2.5 87.9 1.0
PB Q:ADP601 2.7 87.9 1.0
NZ Q:LYS171 3.2 89.3 1.0
PA Q:ADP601 3.3 87.9 1.0
O3A Q:ADP601 3.5 87.9 1.0
CB Q:ASP99 3.9 89.8 1.0
AL Q:AF3603 4.0 93.7 1.0
F2 Q:AF3603 4.0 93.7 1.0
O1B Q:ADP601 4.1 87.9 1.0
F1 Q:AF3603 4.1 93.7 1.0
N Q:GLY100 4.2 88.9 1.0
F3 Q:AF3603 4.3 93.7 1.0
OD2 Q:ASP394 4.3 92.6 1.0
C5' Q:ADP601 4.3 87.9 1.0
O5' Q:ADP601 4.3 87.9 1.0
O1A Q:ADP601 4.4 87.9 1.0
CA Q:ASP99 4.6 89.8 1.0
OG Q:SER170 4.6 90.5 1.0
CB Q:SER170 4.7 90.5 1.0
O Q:SER167 4.7 88.7 1.0
CE Q:LYS171 4.7 89.3 1.0
C Q:ASP99 4.9 89.8 1.0

Magnesium binding site 8 out of 16 in 8shf

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Magnesium binding site 8 out of 16 in the Cct-G Beta 5 Complex Closed State 7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cct-G Beta 5 Complex Closed State 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Mg602

b:87.9
occ:1.00
O2A Z:ADP601 2.0 89.9 1.0
O2B Z:ADP601 2.0 89.9 1.0
OD1 Z:ASP90 2.1 89.1 1.0
O3B Z:ADP601 2.3 89.9 1.0
PB Z:ADP601 2.6 89.9 1.0
CG Z:ASP90 2.8 89.1 1.0
OD2 Z:ASP90 2.9 89.1 1.0
PA Z:ADP601 3.2 89.9 1.0
O3A Z:ADP601 3.3 89.9 1.0
NZ Z:LYS159 3.9 87.5 1.0
O1B Z:ADP601 4.0 89.9 1.0
F1 Z:AF3603 4.1 95.0 1.0
AL Z:AF3603 4.1 95.0 1.0
N Z:GLY91 4.2 89.3 1.0
O5' Z:ADP601 4.2 89.9 1.0
CB Z:ASP90 4.3 89.1 1.0
O1A Z:ADP601 4.3 89.9 1.0
OG1 Z:THR158 4.3 88.6 1.0
F3 Z:AF3603 4.4 95.0 1.0
CE Z:LYS159 4.4 87.5 1.0
F2 Z:AF3603 4.4 95.0 1.0
CA Z:ASP90 4.8 89.1 1.0
CA Z:GLY91 4.9 89.3 1.0
C5' Z:ADP601 4.9 89.9 1.0
C Z:ASP90 5.0 89.1 1.0

Magnesium binding site 9 out of 16 in 8shf

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Magnesium binding site 9 out of 16 in the Cct-G Beta 5 Complex Closed State 7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cct-G Beta 5 Complex Closed State 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg602

b:95.8
occ:1.00
O3A a:ADP601 2.0 93.3 1.0
O1A a:ADP601 2.1 93.3 1.0
F1 a:AF3603 2.1 96.1 1.0
O1B a:ADP601 2.4 93.3 1.0
PB a:ADP601 2.5 93.3 1.0
PA a:ADP601 2.5 93.3 1.0
OD1 a:ASP88 2.6 91.1 1.0
O2B a:ADP601 2.7 93.3 1.0
AL a:AF3603 3.3 96.1 1.0
O5' a:ADP601 3.6 93.3 1.0
CG a:ASP88 3.6 91.1 1.0
O2A a:ADP601 3.7 93.3 1.0
NZ a:LYS159 3.7 90.6 1.0
O3B a:ADP601 3.9 93.3 1.0
OD2 a:ASP88 4.1 91.1 1.0
N a:GLY89 4.1 89.7 1.0
F3 a:AF3603 4.2 96.1 1.0
OD2 a:ASP394 4.5 90.4 1.0
F2 a:AF3603 4.6 96.1 1.0
C5' a:ADP601 4.6 93.3 1.0
O a:SER155 4.8 91.8 1.0
CA a:GLY89 4.8 89.7 1.0
O a:HOH702 4.8 88.3 1.0
CB a:ASP88 4.9 91.1 1.0
CA a:ASP88 4.9 91.1 1.0
CE a:LYS159 5.0 90.6 1.0

Magnesium binding site 10 out of 16 in 8shf

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Magnesium binding site 10 out of 16 in the Cct-G Beta 5 Complex Closed State 7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cct-G Beta 5 Complex Closed State 7 within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg602

b:89.5
occ:1.00
O3A b:ADP601 2.0 85.7 1.0
F1 b:AF3603 2.0 89.8 1.0
OD2 b:ASP97 2.1 89.0 1.0
OD1 b:ASP97 2.2 89.0 1.0
O1A b:ADP601 2.2 85.7 1.0
CG b:ASP97 2.4 89.0 1.0
PA b:ADP601 2.6 85.7 1.0
PB b:ADP601 3.3 85.7 1.0
O5' b:ADP601 3.5 85.7 1.0
AL b:AF3603 3.5 89.8 1.0
O1B b:ADP601 3.6 85.7 1.0
O2B b:ADP601 3.7 85.7 1.0
O b:THR166 3.8 84.2 1.0
CB b:ASP97 3.9 89.0 1.0
O2A b:ADP601 3.9 85.7 1.0
CG2 b:THR166 4.2 84.2 1.0
CE b:LYS170 4.2 85.9 1.0
F3 b:AF3603 4.2 89.8 1.0
NZ b:LYS170 4.4 85.9 1.0
O3B b:ADP601 4.4 85.7 1.0
CA b:THR166 4.5 84.2 1.0
C b:THR166 4.6 84.2 1.0
CA b:ASP97 4.7 89.0 1.0
C5' b:ADP601 4.8 85.7 1.0
N b:GLY98 4.8 86.6 1.0
F2 b:AF3603 4.8 89.8 1.0
OD2 b:ASP392 4.9 88.6 1.0
CB b:THR166 5.0 84.2 1.0

Reference:

S.Wang, M.I.Sass, Y.Kwon, W.G.Ludlam, T.M.Smith, E.J.Carter, N.E.Gladden, M.Riggi, J.H.Iwasa, B.M.Willardson, P.S.Shen. Visualizing the Chaperone-Mediated Folding Trajectory of the G Protein Beta 5 Beta-Propeller. Mol.Cell 2023.
ISSN: ISSN 1097-2765
PubMed: 37852256
DOI: 10.1016/J.MOLCEL.2023.09.032
Page generated: Fri Oct 4 19:43:52 2024

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