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Magnesium in PDB 8shp: Cct G Beta 5 Complex Closed State 13

Other elements in 8shp:

The structure of Cct G Beta 5 Complex Closed State 13 also contains other interesting chemical elements:

Aluminium (Al) 16 atoms
Fluorine (F) 48 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Cct G Beta 5 Complex Closed State 13 (pdb code 8shp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Cct G Beta 5 Complex Closed State 13, PDB code: 8shp:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in 8shp

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Magnesium binding site 1 out of 16 in the Cct G Beta 5 Complex Closed State 13


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cct G Beta 5 Complex Closed State 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:97.1
occ:1.00
O3A A:ADP601 2.0 102.3 1.0
F1 A:AF3603 2.0 107.1 1.0
OD1 A:ASP88 2.4 101.0 1.0
O2A A:ADP601 2.6 102.3 1.0
O3B A:ADP601 2.8 102.3 1.0
PA A:ADP601 2.8 102.3 1.0
PB A:ADP601 2.9 102.3 1.0
O2B A:ADP601 3.3 102.3 1.0
CG A:ASP88 3.3 101.0 1.0
OD2 A:ASP88 3.5 101.0 1.0
AL A:AF3603 3.6 107.1 1.0
O5' A:ADP601 3.7 102.3 1.0
NZ A:LYS159 3.9 97.8 1.0
O1A A:ADP601 4.0 102.3 1.0
O1B A:ADP601 4.2 102.3 1.0
O A:SER155 4.2 101.6 1.0
N A:GLY89 4.3 100.8 1.0
F3 A:AF3603 4.4 107.1 1.0
CB A:ASP88 4.7 101.0 1.0
F2 A:AF3603 4.8 107.1 1.0
OD2 A:ASP394 5.0 100.3 1.0

Magnesium binding site 2 out of 16 in 8shp

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Magnesium binding site 2 out of 16 in the Cct G Beta 5 Complex Closed State 13


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cct G Beta 5 Complex Closed State 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:100.8
occ:1.00
O3A B:ADP601 2.0 94.8 1.0
F1 B:AF3603 2.0 100.0 1.0
OD1 B:ASP97 2.1 98.1 1.0
OD2 B:ASP97 2.1 98.1 1.0
CG B:ASP97 2.4 98.1 1.0
O2A B:ADP601 2.4 94.8 1.0
PA B:ADP601 2.7 94.8 1.0
PB B:ADP601 3.2 94.8 1.0
O5' B:ADP601 3.5 94.8 1.0
AL B:AF3603 3.5 100.0 1.0
O3B B:ADP601 3.5 94.8 1.0
O2B B:ADP601 3.6 94.8 1.0
CB B:ASP97 3.9 98.1 1.0
O B:THR166 4.0 94.9 1.0
O1A B:ADP601 4.0 94.8 1.0
CG2 B:THR166 4.2 94.9 1.0
F3 B:AF3603 4.3 100.0 1.0
O1B B:ADP601 4.4 94.8 1.0
CE B:LYS170 4.4 96.5 1.0
CA B:THR166 4.5 94.9 1.0
NZ B:LYS170 4.6 96.5 1.0
C B:THR166 4.7 94.9 1.0
CA B:ASP97 4.7 98.1 1.0
C5' B:ADP601 4.7 94.8 1.0
N B:GLY98 4.7 95.9 1.0
F2 B:AF3603 4.8 100.0 1.0
CB B:THR166 5.0 94.9 1.0

Magnesium binding site 3 out of 16 in 8shp

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Magnesium binding site 3 out of 16 in the Cct G Beta 5 Complex Closed State 13


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cct G Beta 5 Complex Closed State 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:99.0
occ:1.00
F2 D:AF3603 2.0 100.6 1.0
O3A D:ADP601 2.0 98.2 1.0
OD1 D:ASP104 2.0 99.7 1.0
O2A D:ADP601 2.4 98.2 1.0
CG D:ASP104 2.7 99.7 1.0
PA D:ADP601 2.7 98.2 1.0
OD2 D:ASP104 2.7 99.7 1.0
PB D:ADP601 3.3 98.2 1.0
O5' D:ADP601 3.4 98.2 1.0
O3B D:ADP601 3.6 98.2 1.0
O2B D:ADP601 3.7 98.2 1.0
AL D:AF3603 3.7 100.6 1.0
NZ D:LYS174 3.8 96.3 1.0
O1A D:ADP601 4.0 98.2 1.0
CB D:ASP104 4.2 99.7 1.0
O D:SER170 4.2 96.2 1.0
N D:GLY105 4.2 95.6 1.0
O1B D:ADP601 4.4 98.2 1.0
OG D:SER173 4.5 98.2 1.0
C5' D:ADP601 4.7 98.2 1.0
CA D:SER170 4.7 96.2 1.0
F1 D:AF3603 4.7 100.6 1.0
CA D:ASP104 4.7 99.7 1.0
OD2 D:ASP407 4.8 97.4 1.0
C D:SER170 4.9 96.2 1.0
F3 D:AF3603 5.0 100.6 1.0

Magnesium binding site 4 out of 16 in 8shp

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Magnesium binding site 4 out of 16 in the Cct G Beta 5 Complex Closed State 13


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cct G Beta 5 Complex Closed State 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg602

b:96.4
occ:1.00
F1 E:AF3603 1.9 94.1 1.0
O3A E:ADP601 2.0 95.3 1.0
OD1 E:ASP104 2.1 97.7 1.0
O2A E:ADP601 2.3 95.3 1.0
PA E:ADP601 2.6 95.3 1.0
CG E:ASP104 3.0 97.7 1.0
OD2 E:ASP104 3.2 97.7 1.0
PB E:ADP601 3.4 95.3 1.0
O5' E:ADP601 3.4 95.3 1.0
AL E:AF3603 3.5 94.1 1.0
O3B E:ADP601 3.7 95.3 1.0
O2B E:ADP601 3.7 95.3 1.0
O1A E:ADP601 4.0 95.3 1.0
NZ E:LYS176 4.1 95.8 1.0
N E:GLY105 4.1 93.9 1.0
O E:THR172 4.1 95.1 1.0
F3 E:AF3603 4.2 94.1 1.0
OG E:SER175 4.3 95.1 1.0
CB E:ASP104 4.4 97.7 1.0
O1B E:ADP601 4.4 95.3 1.0
CG2 E:THR172 4.5 95.1 1.0
C5' E:ADP601 4.7 95.3 1.0
CA E:THR172 4.8 95.1 1.0
CA E:ASP104 4.8 97.7 1.0
F2 E:AF3603 4.9 94.1 1.0
CA E:GLY105 4.9 93.9 1.0
C E:THR172 4.9 95.1 1.0
C E:ASP104 5.0 97.7 1.0

Magnesium binding site 5 out of 16 in 8shp

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Magnesium binding site 5 out of 16 in the Cct G Beta 5 Complex Closed State 13


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cct G Beta 5 Complex Closed State 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg602

b:97.3
occ:1.00
F2 G:AF3603 2.0 103.9 1.0
O2A G:ADP601 2.0 98.9 1.0
O3B G:ADP601 2.1 98.9 1.0
O2B G:ADP601 2.8 98.9 1.0
PB G:ADP601 2.8 98.9 1.0
PA G:ADP601 3.3 98.9 1.0
O3A G:ADP601 3.5 98.9 1.0
AL G:AF3603 3.6 103.9 1.0
CB G:ASP93 3.7 103.8 1.0
OD2 G:ASP93 3.7 103.8 1.0
N G:GLY94 4.0 99.3 1.0
C5' G:ADP601 4.0 98.9 1.0
CG G:ASP93 4.1 103.8 1.0
O5' G:ADP601 4.2 98.9 1.0
O1B G:ADP601 4.2 98.9 1.0
OG1 G:THR162 4.4 97.2 1.0
O1A G:ADP601 4.4 98.9 1.0
F1 G:AF3603 4.5 103.9 1.0
O G:SER159 4.5 96.1 1.0
CA G:ASP93 4.6 103.8 1.0
F3 G:AF3603 4.6 103.9 1.0
CA G:GLY94 4.8 99.3 1.0
C G:ASP93 4.8 103.8 1.0
OD2 G:ASP393 5.0 105.2 1.0

Magnesium binding site 6 out of 16 in 8shp

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Magnesium binding site 6 out of 16 in the Cct G Beta 5 Complex Closed State 13


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cct G Beta 5 Complex Closed State 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg602

b:96.5
occ:1.00
F2 H:AF3603 1.9 96.0 1.0
OD1 H:ASP92 2.1 97.5 1.0
O3A H:ADP601 2.2 96.2 1.0
O2A H:ADP601 2.5 96.2 1.0
OD2 H:ASP92 2.6 97.5 1.0
CG H:ASP92 2.7 97.5 1.0
PA H:ADP601 3.0 96.2 1.0
PB H:ADP601 3.6 96.2 1.0
AL H:AF3603 3.6 96.0 1.0
O2B H:ADP601 3.8 96.2 1.0
C5' H:ADP601 3.8 96.2 1.0
O5' H:ADP601 3.9 96.2 1.0
O H:ALA162 4.0 95.6 1.0
O3B H:ADP601 4.0 96.2 1.0
O1A H:ADP601 4.2 96.2 1.0
CB H:ASP92 4.2 97.5 1.0
NZ H:LYS166 4.4 96.5 1.0
F1 H:AF3603 4.5 96.0 1.0
N H:GLY93 4.6 94.3 1.0
CA H:ALA162 4.6 95.6 1.0
O1B H:ADP601 4.7 96.2 1.0
C H:ALA162 4.7 95.6 1.0
F3 H:AF3603 4.8 96.0 1.0
CA H:ASP92 4.9 97.5 1.0
OD2 H:ASP391 4.9 97.5 1.0

Magnesium binding site 7 out of 16 in 8shp

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Magnesium binding site 7 out of 16 in the Cct G Beta 5 Complex Closed State 13


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cct G Beta 5 Complex Closed State 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Mg602

b:100.5
occ:1.00
O2A Q:ADP601 2.0 99.0 1.0
OD1 Q:ASP99 2.0 101.4 1.0
O2B Q:ADP601 2.0 99.0 1.0
OD2 Q:ASP99 2.1 101.4 1.0
O3B Q:ADP601 2.1 99.0 1.0
CG Q:ASP99 2.3 101.4 1.0
PB Q:ADP601 2.4 99.0 1.0
NZ Q:LYS171 2.9 100.0 1.0
PA Q:ADP601 3.1 99.0 1.0
O3A Q:ADP601 3.2 99.0 1.0
CB Q:ASP99 3.8 101.4 1.0
O1B Q:ADP601 3.8 99.0 1.0
AL Q:AF3603 3.9 104.4 1.0
N Q:GLY100 3.9 100.9 1.0
F1 Q:AF3603 4.0 104.4 1.0
F2 Q:AF3603 4.1 104.4 1.0
O1A Q:ADP601 4.2 99.0 1.0
O5' Q:ADP601 4.2 99.0 1.0
CE Q:LYS171 4.3 100.0 1.0
C5' Q:ADP601 4.3 99.0 1.0
F3 Q:AF3603 4.3 104.4 1.0
CA Q:ASP99 4.4 101.4 1.0
OG Q:SER170 4.5 101.6 1.0
CB Q:SER170 4.6 101.6 1.0
OD2 Q:ASP394 4.6 102.5 1.0
C Q:ASP99 4.7 101.4 1.0
CA Q:GLY100 4.8 100.9 1.0
CD Q:LYS171 4.9 100.0 1.0

Magnesium binding site 8 out of 16 in 8shp

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Magnesium binding site 8 out of 16 in the Cct G Beta 5 Complex Closed State 13


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cct G Beta 5 Complex Closed State 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Mg602

b:100.3
occ:1.00
O2A Z:ADP601 2.0 99.1 1.0
OD1 Z:ASP90 2.0 100.0 1.0
O2B Z:ADP601 2.0 99.1 1.0
O3B Z:ADP601 2.2 99.1 1.0
PB Z:ADP601 2.5 99.1 1.0
CG Z:ASP90 2.8 100.0 1.0
OD2 Z:ASP90 2.9 100.0 1.0
NZ Z:LYS159 3.0 98.2 1.0
PA Z:ADP601 3.1 99.1 1.0
O3A Z:ADP601 3.3 99.1 1.0
O1B Z:ADP601 3.9 99.1 1.0
AL Z:AF3603 4.0 103.4 1.0
F1 Z:AF3603 4.1 103.4 1.0
N Z:GLY91 4.2 97.1 1.0
CB Z:ASP90 4.2 100.0 1.0
O1A Z:ADP601 4.2 99.1 1.0
O5' Z:ADP601 4.2 99.1 1.0
F2 Z:AF3603 4.3 103.4 1.0
F3 Z:AF3603 4.3 103.4 1.0
OG1 Z:THR158 4.4 100.7 1.0
CE Z:LYS159 4.4 98.2 1.0
CA Z:ASP90 4.7 100.0 1.0
C Z:ASP90 5.0 100.0 1.0
CA Z:GLY91 5.0 97.1 1.0

Magnesium binding site 9 out of 16 in 8shp

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Magnesium binding site 9 out of 16 in the Cct G Beta 5 Complex Closed State 13


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cct G Beta 5 Complex Closed State 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg602

b:97.5
occ:1.00
O3A a:ADP601 2.0 101.5 1.0
OD1 a:ASP88 2.1 100.0 1.0
O1B a:ADP601 2.4 101.5 1.0
PB a:ADP601 2.7 101.5 1.0
CG a:ASP88 3.0 100.0 1.0
F1 a:AF3603 3.2 102.3 1.0
OD2 a:ASP88 3.3 100.0 1.0
PA a:ADP601 3.3 101.5 1.0
O1A a:ADP601 3.5 101.5 1.0
O2B a:ADP601 3.5 101.5 1.0
O3B a:ADP601 3.9 101.5 1.0
O5' a:ADP601 3.9 101.5 1.0
N a:GLY89 4.0 97.3 1.0
AL a:AF3603 4.0 102.3 1.0
CB a:ASP88 4.4 100.0 1.0
NZ a:LYS159 4.4 100.6 1.0
O2A a:ADP601 4.4 101.5 1.0
O a:SER155 4.5 100.1 1.0
OD2 a:ASP394 4.6 98.9 1.0
CA a:ASP88 4.7 100.0 1.0
CA a:GLY89 4.8 97.3 1.0
C a:ASP88 4.9 100.0 1.0
F2 a:AF3603 5.0 102.3 1.0
F3 a:AF3603 5.0 102.3 1.0

Magnesium binding site 10 out of 16 in 8shp

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Magnesium binding site 10 out of 16 in the Cct G Beta 5 Complex Closed State 13


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cct G Beta 5 Complex Closed State 13 within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg602

b:101.9
occ:1.00
F1 b:AF3603 1.9 100.1 1.0
OD1 b:ASP97 2.1 99.4 1.0
OD2 b:ASP97 2.1 99.4 1.0
O1B b:ADP601 2.1 98.8 1.0
O1A b:ADP601 2.2 98.8 1.0
CG b:ASP97 2.4 99.4 1.0
PA b:ADP601 3.0 98.8 1.0
O3A b:ADP601 3.0 98.8 1.0
PB b:ADP601 3.1 98.8 1.0
O5' b:ADP601 3.3 98.8 1.0
O2B b:ADP601 3.6 98.8 1.0
AL b:AF3603 3.6 100.1 1.0
CB b:ASP97 3.9 99.4 1.0
O b:THR166 4.2 95.1 1.0
O3B b:ADP601 4.4 98.8 1.0
N b:GLY98 4.4 96.6 1.0
NZ b:LYS170 4.4 94.1 1.0
O2A b:ADP601 4.4 98.8 1.0
CE b:LYS170 4.4 94.1 1.0
CA b:THR166 4.7 95.1 1.0
F3 b:AF3603 4.7 100.1 1.0
C5' b:ADP601 4.7 98.8 1.0
F2 b:AF3603 4.7 100.1 1.0
CG2 b:THR166 4.7 95.1 1.0
CA b:ASP97 4.7 99.4 1.0
C b:THR166 4.9 95.1 1.0

Reference:

S.Wang, M.Sass, M.B.Willardson, P.S.Shen. Visualizing the Chaperone-Mediated Folding Trajectory of the G Protein Beta 5 Beta-Propeller Structure To Be Published.
Page generated: Thu Dec 28 10:14:13 2023

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