Magnesium in PDB 8sht: Cct G Beta 5 Complex Closed State 14

Other elements in 8sht:

The structure of Cct G Beta 5 Complex Closed State 14 also contains other interesting chemical elements:

Fluorine (F) 48 atoms
Aluminium (Al) 16 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Cct G Beta 5 Complex Closed State 14 (pdb code 8sht). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Cct G Beta 5 Complex Closed State 14, PDB code: 8sht:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in 8sht

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Magnesium binding site 1 out of 16 in the Cct G Beta 5 Complex Closed State 14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cct G Beta 5 Complex Closed State 14 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:70.9
occ:1.00
O3A A:ADP601 2.0 74.8 1.0
F1 A:AF3603 2.1 77.1 1.0
OD1 A:ASP88 2.5 76.4 1.0
O3B A:ADP601 2.6 74.8 1.0
PB A:ADP601 2.8 74.8 1.0
PA A:ADP601 3.2 74.8 1.0
O2A A:ADP601 3.2 74.8 1.0
CG A:ASP88 3.3 76.4 1.0
OD2 A:ASP88 3.4 76.4 1.0
O2B A:ADP601 3.4 74.8 1.0
AL A:AF3603 3.6 77.1 1.0
NZ A:LYS159 3.8 73.7 1.0
O5' A:ADP601 4.0 74.8 1.0
O1B A:ADP601 4.1 74.8 1.0
O A:SER155 4.2 75.6 1.0
O1A A:ADP601 4.3 74.8 1.0
OD2 A:ASP394 4.3 75.5 1.0
F3 A:AF3603 4.4 77.1 1.0
N A:GLY89 4.5 74.5 1.0
CB A:ASP88 4.7 76.4 1.0
F2 A:AF3603 4.9 77.1 1.0

Magnesium binding site 2 out of 16 in 8sht

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Magnesium binding site 2 out of 16 in the Cct G Beta 5 Complex Closed State 14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cct G Beta 5 Complex Closed State 14 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:76.2
occ:1.00
O3A B:ADP601 2.0 71.7 1.0
OD1 B:ASP97 2.0 73.0 1.0
OD2 B:ASP97 2.1 73.0 1.0
F1 B:AF3603 2.2 74.4 1.0
O2A B:ADP601 2.2 71.7 1.0
CG B:ASP97 2.3 73.0 1.0
PA B:ADP601 2.6 71.7 1.0
PB B:ADP601 3.4 71.7 1.0
O5' B:ADP601 3.5 71.7 1.0
O B:THR166 3.7 69.2 1.0
AL B:AF3603 3.7 74.4 1.0
O2B B:ADP601 3.7 71.7 1.0
O3B B:ADP601 3.8 71.7 1.0
CB B:ASP97 3.8 73.0 1.0
O1A B:ADP601 3.9 71.7 1.0
CG2 B:THR166 4.3 69.2 1.0
CA B:THR166 4.4 69.2 1.0
O1B B:ADP601 4.5 71.7 1.0
C B:THR166 4.5 69.2 1.0
NZ B:LYS170 4.5 69.0 1.0
CE B:LYS170 4.6 69.0 1.0
CA B:ASP97 4.7 73.0 1.0
F3 B:AF3603 4.8 74.4 1.0
F2 B:AF3603 4.8 74.4 1.0
C5' B:ADP601 4.8 71.7 1.0
N B:GLY98 4.8 70.3 1.0
CB B:THR166 4.9 69.2 1.0

Magnesium binding site 3 out of 16 in 8sht

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Magnesium binding site 3 out of 16 in the Cct G Beta 5 Complex Closed State 14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cct G Beta 5 Complex Closed State 14 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg602

b:75.8
occ:1.00
F2 D:AF3603 2.0 76.1 1.0
OD1 D:ASP104 2.1 74.7 1.0
O3A D:ADP601 2.1 73.3 1.0
O2A D:ADP601 2.4 73.3 1.0
PA D:ADP601 2.7 73.3 1.0
CG D:ASP104 2.8 74.7 1.0
OD2 D:ASP104 2.9 74.7 1.0
PB D:ADP601 3.4 73.3 1.0
O5' D:ADP601 3.5 73.3 1.0
O2B D:ADP601 3.7 73.3 1.0
AL D:AF3603 3.8 76.1 1.0
O3B D:ADP601 3.8 73.3 1.0
O1A D:ADP601 4.1 73.3 1.0
NZ D:LYS174 4.1 72.7 1.0
O D:SER170 4.2 73.0 1.0
CB D:ASP104 4.3 74.7 1.0
OG D:SER173 4.3 73.2 1.0
N D:GLY105 4.3 71.4 1.0
OG D:SER170 4.4 73.0 1.0
O1B D:ADP601 4.5 73.3 1.0
CA D:SER170 4.6 73.0 1.0
OD2 D:ASP407 4.7 74.2 1.0
C5' D:ADP601 4.7 73.3 1.0
F1 D:AF3603 4.8 76.1 1.0
CA D:ASP104 4.8 74.7 1.0
C D:SER170 4.9 73.0 1.0
F3 D:AF3603 5.0 76.1 1.0

Magnesium binding site 4 out of 16 in 8sht

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Magnesium binding site 4 out of 16 in the Cct G Beta 5 Complex Closed State 14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cct G Beta 5 Complex Closed State 14 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg602

b:72.4
occ:1.00
F1 E:AF3603 2.0 69.7 1.0
O3A E:ADP601 2.0 72.3 1.0
OD1 E:ASP104 2.3 72.0 1.0
O2A E:ADP601 2.7 72.3 1.0
PA E:ADP601 2.9 72.3 1.0
CG E:ASP104 3.1 72.0 1.0
PB E:ADP601 3.2 72.3 1.0
OD2 E:ASP104 3.2 72.0 1.0
O2B E:ADP601 3.5 72.3 1.0
O3B E:ADP601 3.5 72.3 1.0
O5' E:ADP601 3.5 72.3 1.0
AL E:AF3603 3.7 69.7 1.0
O E:THR172 4.1 72.1 1.0
N E:GLY105 4.2 68.9 1.0
O1A E:ADP601 4.2 72.3 1.0
O1B E:ADP601 4.4 72.3 1.0
CB E:ASP104 4.5 72.0 1.0
F3 E:AF3603 4.5 69.7 1.0
OG E:SER175 4.6 70.7 1.0
CG2 E:THR172 4.6 72.1 1.0
CA E:THR172 4.7 72.1 1.0
C5' E:ADP601 4.7 72.3 1.0
C E:THR172 4.8 72.1 1.0
CA E:GLY105 4.9 68.9 1.0
F2 E:AF3603 4.9 69.7 1.0
NZ E:LYS176 4.9 70.1 1.0
CA E:ASP104 4.9 72.0 1.0

Magnesium binding site 5 out of 16 in 8sht

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Magnesium binding site 5 out of 16 in the Cct G Beta 5 Complex Closed State 14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cct G Beta 5 Complex Closed State 14 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg602

b:74.0
occ:1.00
F2 G:AF3603 2.0 78.5 1.0
O2A G:ADP601 2.1 74.5 1.0
O3B G:ADP601 2.3 74.5 1.0
OD2 G:ASP93 3.0 77.0 1.0
PB G:ADP601 3.3 74.5 1.0
O2B G:ADP601 3.4 74.5 1.0
PA G:ADP601 3.5 74.5 1.0
AL G:AF3603 3.7 78.5 1.0
CG G:ASP93 3.8 77.0 1.0
O3A G:ADP601 3.8 74.5 1.0
CB G:ASP93 3.9 77.0 1.0
C5' G:ADP601 4.0 74.5 1.0
O G:SER159 4.0 70.6 1.0
N G:GLY94 4.2 73.5 1.0
OG1 G:THR162 4.2 71.3 1.0
O5' G:ADP601 4.3 74.5 1.0
O1A G:ADP601 4.6 74.5 1.0
O1B G:ADP601 4.7 74.5 1.0
F3 G:AF3603 4.7 78.5 1.0
OG G:SER159 4.8 70.6 1.0
F1 G:AF3603 4.8 78.5 1.0
CA G:GLY94 4.9 73.5 1.0
OD1 G:ASP93 4.9 77.0 1.0
CA G:ASP93 5.0 77.0 1.0
OD2 G:ASP393 5.0 76.4 1.0

Magnesium binding site 6 out of 16 in 8sht

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Magnesium binding site 6 out of 16 in the Cct G Beta 5 Complex Closed State 14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cct G Beta 5 Complex Closed State 14 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg602

b:69.6
occ:1.00
F2 H:AF3603 2.0 71.6 1.0
OD1 H:ASP92 2.1 72.2 1.0
O3A H:ADP601 2.1 69.8 1.0
OD2 H:ASP92 2.5 72.2 1.0
CG H:ASP92 2.6 72.2 1.0
O2A H:ADP601 2.7 69.8 1.0
PA H:ADP601 3.0 69.8 1.0
PB H:ADP601 3.4 69.8 1.0
O2B H:ADP601 3.6 69.8 1.0
AL H:AF3603 3.6 71.6 1.0
O3B H:ADP601 3.8 69.8 1.0
C5' H:ADP601 3.8 69.8 1.0
O5' H:ADP601 3.9 69.8 1.0
O H:ALA162 4.1 69.2 1.0
CB H:ASP92 4.1 72.2 1.0
NZ H:LYS166 4.1 69.8 1.0
O1A H:ADP601 4.2 69.8 1.0
F1 H:AF3603 4.5 71.6 1.0
N H:GLY93 4.5 70.3 1.0
O1B H:ADP601 4.5 69.8 1.0
CA H:ALA162 4.7 69.2 1.0
C H:ALA162 4.8 69.2 1.0
CA H:ASP92 4.8 72.2 1.0
F3 H:AF3603 4.9 71.6 1.0

Magnesium binding site 7 out of 16 in 8sht

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Magnesium binding site 7 out of 16 in the Cct G Beta 5 Complex Closed State 14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cct G Beta 5 Complex Closed State 14 within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Mg602

b:71.9
occ:1.00
O2A Q:ADP601 2.1 72.9 1.0
OD1 Q:ASP99 2.1 73.9 1.0
OD2 Q:ASP99 2.2 73.9 1.0
O2B Q:ADP601 2.2 72.9 1.0
CG Q:ASP99 2.4 73.9 1.0
O3B Q:ADP601 2.5 72.9 1.0
PB Q:ADP601 2.8 72.9 1.0
NZ Q:LYS171 3.0 73.3 1.0
PA Q:ADP601 3.3 72.9 1.0
O3A Q:ADP601 3.5 72.9 1.0
CB Q:ASP99 3.9 73.9 1.0
N Q:GLY100 4.1 71.8 1.0
AL Q:AF3603 4.1 75.3 1.0
O1B Q:ADP601 4.2 72.9 1.0
C5' Q:ADP601 4.2 72.9 1.0
F2 Q:AF3603 4.2 75.3 1.0
F1 Q:AF3603 4.3 75.3 1.0
F3 Q:AF3603 4.3 75.3 1.0
O5' Q:ADP601 4.3 72.9 1.0
CE Q:LYS171 4.4 73.3 1.0
O1A Q:ADP601 4.4 72.9 1.0
CA Q:ASP99 4.5 73.9 1.0
OG Q:SER170 4.6 74.1 1.0
CB Q:SER170 4.6 74.1 1.0
O Q:SER167 4.7 74.4 1.0
C Q:ASP99 4.8 73.9 1.0
OD2 Q:ASP394 4.8 75.3 1.0
CA Q:GLY100 4.9 71.8 1.0
CD Q:LYS171 5.0 73.3 1.0

Magnesium binding site 8 out of 16 in 8sht

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Magnesium binding site 8 out of 16 in the Cct G Beta 5 Complex Closed State 14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cct G Beta 5 Complex Closed State 14 within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Mg602

b:73.7
occ:1.00
O2A Z:ADP601 2.0 74.2 1.0
O2B Z:ADP601 2.0 74.2 1.0
OD1 Z:ASP90 2.0 75.3 1.0
O3B Z:ADP601 2.2 74.2 1.0
PB Z:ADP601 2.5 74.2 1.0
CG Z:ASP90 2.7 75.3 1.0
OD2 Z:ASP90 2.7 75.3 1.0
PA Z:ADP601 3.1 74.2 1.0
O3A Z:ADP601 3.2 74.2 1.0
O1B Z:ADP601 3.9 74.2 1.0
AL Z:AF3603 3.9 78.2 1.0
NZ Z:LYS159 4.0 73.2 1.0
CE Z:LYS159 4.1 73.2 1.0
F1 Z:AF3603 4.1 78.2 1.0
O1A Z:ADP601 4.1 74.2 1.0
CB Z:ASP90 4.1 75.3 1.0
F3 Z:AF3603 4.2 78.2 1.0
N Z:GLY91 4.2 74.5 1.0
O5' Z:ADP601 4.3 74.2 1.0
OG1 Z:THR158 4.3 74.8 1.0
F2 Z:AF3603 4.4 78.2 1.0
CA Z:ASP90 4.6 75.3 1.0
CD Z:LYS159 4.8 73.2 1.0
C5' Z:ADP601 5.0 74.2 1.0
C Z:ASP90 5.0 75.3 1.0

Magnesium binding site 9 out of 16 in 8sht

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Magnesium binding site 9 out of 16 in the Cct G Beta 5 Complex Closed State 14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cct G Beta 5 Complex Closed State 14 within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Mg602

b:77.7
occ:1.00
O3A a:ADP601 2.0 77.0 1.0
O1B a:ADP601 2.1 77.0 1.0
OD1 a:ASP88 2.2 75.7 1.0
F1 a:AF3603 2.4 78.6 1.0
PB a:ADP601 2.6 77.0 1.0
CG a:ASP88 3.3 75.7 1.0
O2B a:ADP601 3.3 77.0 1.0
PA a:ADP601 3.3 77.0 1.0
O1A a:ADP601 3.5 77.0 1.0
AL a:AF3603 3.6 78.6 1.0
OD2 a:ASP88 3.6 75.7 1.0
O3B a:ADP601 3.8 77.0 1.0
N a:GLY89 4.1 74.3 1.0
NZ a:LYS159 4.1 75.1 1.0
O5' a:ADP601 4.2 77.0 1.0
O2A a:ADP601 4.4 77.0 1.0
O a:SER155 4.5 75.0 1.0
F3 a:AF3603 4.5 78.6 1.0
CB a:ASP88 4.6 75.7 1.0
F2 a:AF3603 4.6 78.6 1.0
OD2 a:ASP394 4.6 74.1 1.0
CA a:ASP88 4.7 75.7 1.0
CA a:GLY89 4.8 74.3 1.0
CE a:LYS159 4.9 75.1 1.0
C a:ASP88 4.9 75.7 1.0

Magnesium binding site 10 out of 16 in 8sht

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Magnesium binding site 10 out of 16 in the Cct G Beta 5 Complex Closed State 14


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cct G Beta 5 Complex Closed State 14 within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Mg602

b:73.1
occ:1.00
F1 b:AF3603 2.1 74.9 1.0
O3A b:ADP601 2.1 71.8 1.0
OD1 b:ASP97 2.1 74.6 1.0
OD2 b:ASP97 2.2 74.6 1.0
O1A b:ADP601 2.3 71.8 1.0
CG b:ASP97 2.5 74.6 1.0
PA b:ADP601 2.7 71.8 1.0
PB b:ADP601 3.4 71.8 1.0
AL b:AF3603 3.6 74.9 1.0
O5' b:ADP601 3.6 71.8 1.0
NZ b:LYS170 3.7 69.0 1.0
O2B b:ADP601 3.7 71.8 1.0
O b:THR166 3.8 68.7 1.0
O1B b:ADP601 3.8 71.8 1.0
CB b:ASP97 4.0 74.6 1.0
O2A b:ADP601 4.0 71.8 1.0
CG2 b:THR166 4.2 68.7 1.0
F3 b:AF3603 4.3 74.9 1.0
CA b:THR166 4.4 68.7 1.0
O3B b:ADP601 4.5 71.8 1.0
C b:THR166 4.5 68.7 1.0
CA b:ASP97 4.7 74.6 1.0
C5' b:ADP601 4.9 71.8 1.0
CB b:THR166 4.9 68.7 1.0
CE b:LYS170 4.9 69.0 1.0
F2 b:AF3603 4.9 74.9 1.0
N b:GLY98 5.0 71.9 1.0

Reference:

S.Wang, M.Sass, M.B.Willardson, P.S.Shen. Visualizing the Chaperone-Mediated Folding Trajectory of the G Protein Beta 5 Beta-Propeller Structure To Be Published.
Page generated: Fri Oct 4 19:53:24 2024

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