Magnesium in PDB 8spg: Crystal Structure of N-Terminally Truncated Escherichia Coli Rapa in Complex with Mgadp

Protein crystallography data

The structure of Crystal Structure of N-Terminally Truncated Escherichia Coli Rapa in Complex with Mgadp, PDB code: 8spg was solved by G.X.Shaw, X.Ji, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.35 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.567, 82.099, 188.546, 90, 90, 90
R / Rfree (%) 19.8 / 23.6

Other elements in 8spg:

The structure of Crystal Structure of N-Terminally Truncated Escherichia Coli Rapa in Complex with Mgadp also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of N-Terminally Truncated Escherichia Coli Rapa in Complex with Mgadp (pdb code 8spg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of N-Terminally Truncated Escherichia Coli Rapa in Complex with Mgadp, PDB code: 8spg:

Magnesium binding site 1 out of 1 in 8spg

Go back to Magnesium Binding Sites List in 8spg
Magnesium binding site 1 out of 1 in the Crystal Structure of N-Terminally Truncated Escherichia Coli Rapa in Complex with Mgadp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of N-Terminally Truncated Escherichia Coli Rapa in Complex with Mgadp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:21.6
occ:1.00
O A:HOH1253 1.9 28.7 1.0
O A:HOH1169 2.0 21.5 1.0
O A:HOH1305 2.0 20.7 1.0
O A:HOH1119 2.0 26.8 1.0
O3B A:ADP1001 2.0 19.8 1.0
O A:HOH1243 2.1 24.6 1.0
PB A:ADP1001 3.3 21.0 1.0
O1B A:ADP1001 3.5 25.6 1.0
OG1 A:THR184 3.8 23.4 1.0
O1A A:ADP1001 3.8 22.8 1.0
OD1 A:ASP280 4.0 24.0 1.0
OD2 A:ASP280 4.0 24.2 1.0
O A:HOH1334 4.1 27.8 1.0
O A:HOH1549 4.2 38.0 1.0
O A:HOH1376 4.3 47.9 1.0
OE1 A:GLU281 4.4 37.8 1.0
O3A A:ADP1001 4.4 25.7 1.0
O2B A:ADP1001 4.4 22.9 1.0
CG A:ASP280 4.5 26.6 1.0
CE A:LYS183 4.5 23.3 1.0
PA A:ADP1001 4.6 20.6 1.0
NZ A:LYS183 4.8 20.2 1.0
O A:HOH1356 4.8 28.6 1.0
CD A:GLU281 4.8 41.7 1.0
O A:HOH1443 4.9 29.4 1.0
CB A:LYS183 4.9 20.9 1.0
N A:THR184 5.0 19.2 1.0
O2A A:ADP1001 5.0 20.9 1.0

Reference:

G.X.Shaw, X.Ji. Crystal Structure of N-Terminally Truncated Escherichia Coli Rapa in Complex with Mgadp To Be Published.
Page generated: Fri Oct 4 19:56:16 2024

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