Magnesium in PDB 8swo: Gpppa Dinucleotide Ligand Binding to Rna Uc Template

The structure of Gpppa Dinucleotide Ligand Binding to Rna Uc Template, PDB code: 8swo was solved by W.Zhang, Y.Dantsu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.19 / 1.64
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	44.121, 44.121, 84.53, 90, 90, 120
R / Rfree (%)	24.8 / 27.5

The binding sites of Magnesium atom in the Gpppa Dinucleotide Ligand Binding to Rna Uc Template (pdb code 8swo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Gpppa Dinucleotide Ligand Binding to Rna Uc Template, PDB code: 8swo:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Gpppa Dinucleotide Ligand Binding to Rna Uc Template


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Gpppa Dinucleotide Ligand Binding to Rna Uc Template within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:44.9 occ:0.33 O42 B:G3A101 2.4 43.4 1.0 O43 B:G3A101 2.4 41.5 1.0 C43 B:G3A101 3.4 41.1 1.0 C42 B:G3A101 3.4 39.2 1.0 C44 B:G3A101 3.8 42.9 1.0 C41 B:G3A101 4.5 36.3 1.0 O44 B:G3A101 4.6 41.5 1.0

Magnesium binding site 2 out of 2 in the Gpppa Dinucleotide Ligand Binding to Rna Uc Template


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Gpppa Dinucleotide Ligand Binding to Rna Uc Template within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg102 b:46.5 occ:0.33 O42 A:G3A101 2.4 39.3 1.0 O43 A:G3A101 2.5 43.4 1.0 C42 A:G3A101 3.3 36.2 1.0 C43 A:G3A101 3.4 38.3 1.0 C44 A:G3A101 3.8 39.9 1.0 C41 A:G3A101 4.5 35.1 1.0 O44 A:G3A101 4.6 35.2 1.0 O A:HOH203 4.8 42.8 1.0 C45 A:G3A101 4.9 38.3 1.0

W.Zhang, Y.Dantsu. Gpppa Dinucleotide Ligand Binding to Rna Uc Template To Be Published.