Magnesium in PDB 8sx6: Rna Duplex Bound with Gmp and Amp Monomers

The structure of Rna Duplex Bound with Gmp and Amp Monomers, PDB code: 8sx6 was solved by W.Zhang, Y.Dantsu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.73 / 1.45
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	43.526, 43.526, 80.139, 90, 90, 120
R / Rfree (%)	22 / 24.2

The binding sites of Magnesium atom in the Rna Duplex Bound with Gmp and Amp Monomers (pdb code 8sx6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Rna Duplex Bound with Gmp and Amp Monomers, PDB code: 8sx6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Rna Duplex Bound with Gmp and Amp Monomers


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rna Duplex Bound with Gmp and Amp Monomers within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:27.3 occ:1.00 O A:HOH207 4.0 24.8 1.0 O2' A:A5 4.5 22.2 1.0 C5' A:C6 4.6 20.9 1.0

Magnesium binding site 2 out of 2 in the Rna Duplex Bound with Gmp and Amp Monomers


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Rna Duplex Bound with Gmp and Amp Monomers within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg104 b:25.0 occ:1.00 O A:HOH234 2.0 25.3 1.0 O B:HOH203 2.0 30.9 1.0 O A:HOH231 2.0 28.5 1.0 O A:HOH218 2.1 28.8 1.0 O B:HOH228 2.1 22.6 1.0 O B:HOH214 2.1 29.3 1.0 O A:HOH207 4.0 24.8 1.0 O A:HOH235 4.1 41.2 1.0 OP2 B:A5 4.2 25.7 1.0 O A:HOH209 4.3 25.0 1.0 O B:HOH208 4.3 34.0 1.0 OP1 B:A5 4.3 26.8 1.0 OP2 A:U7 4.4 22.4 1.0 OP1 B:LCG4 4.4 25.2 1.0 OP1 A:C6 4.5 22.7 1.0 P B:A5 4.7 24.8 1.0

W.Zhang, Y.Dantsu. Rna Duplex Bound with Gmp and Amp Monomers To Be Published.