Magnesium in PDB 8t1p: BMRCD_OC-Adpvi

The structure of BMRCD_OC-Adpvi also contains other interesting chemical elements:

Vanadium

(V)

1 atom

The binding sites of Magnesium atom in the BMRCD_OC-Adpvi (pdb code 8t1p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the BMRCD_OC-Adpvi, PDB code: 8t1p:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the BMRCD_OC-Adpvi


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of BMRCD_OC-Adpvi within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:26.2 occ:1.00 OE1 C:GLN419 2.0 40.8 1.0 HG1 C:THR378 2.2 26.6 1.0 O3G C:ATP601 2.6 41.7 1.0 OG1 C:THR378 2.7 24.7 1.0 O2B C:ATP601 2.8 37.5 1.0 CD C:GLN419 3.1 51.5 1.0 HE22 C:GLN419 3.3 45.0 1.0 HB C:THR378 3.4 26.6 1.0 HB2 D:SER569 3.6 34.2 1.0 NE2 C:GLN419 3.6 45.0 1.0 CB C:THR378 3.6 26.6 1.0 PG C:ATP601 3.7 44.0 1.0 O3B C:ATP601 3.8 46.5 1.0 PB C:ATP601 3.9 29.4 1.0 OD1 C:ASP499 4.0 40.0 1.0 H D:SER569 4.0 34.1 1.0 HB2 C:GLN419 4.0 33.8 1.0 H C:THR378 4.1 19.8 1.0 HG21 C:THR378 4.2 48.0 1.0 HB3 C:GLN419 4.3 33.8 1.0 CG C:GLN419 4.3 56.2 1.0 HZ1 C:LYS377 4.3 48.8 1.0 HB2 C:LYS377 4.3 45.4 1.0 HG D:SER569 4.4 34.2 1.0 HZ3 C:LYS377 4.4 48.8 1.0 CB C:GLN419 4.5 33.8 1.0 HB2 D:SER568 4.5 31.4 1.0 CB D:SER569 4.5 34.2 1.0 CG2 C:THR378 4.5 48.0 1.0 O1G C:ATP601 4.6 40.4 1.0 OG D:SER569 4.6 40.9 1.0 N C:THR378 4.6 19.8 1.0 HE21 C:GLN419 4.6 45.0 1.0 O2A C:ATP601 4.6 28.2 1.0 OD2 C:ASP499 4.6 48.1 1.0 O2G C:ATP601 4.7 39.1 1.0 CG C:ASP499 4.7 45.2 1.0 CA C:THR378 4.7 17.5 1.0 N D:SER569 4.8 34.1 1.0 NZ C:LYS377 4.9 48.8 1.0 HG3 C:GLN419 4.9 56.2 1.0 H D:GLY570 4.9 24.2 1.0 O1B C:ATP601 4.9 44.8 1.0 HE2 C:LYS377 5.0 51.2 1.0 O3A C:ATP601 5.0 35.6 1.0

Magnesium binding site 2 out of 2 in the BMRCD_OC-Adpvi


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of BMRCD_OC-Adpvi within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg702 b:28.7 occ:1.00 HB2 D:SER470 2.3 20.6 1.0 HG D:SER470 2.4 20.6 1.0 O3B D:AOV701 2.6 49.3 1.0 OG D:SER470 2.7 26.0 1.0 HE22 D:GLN511 2.8 25.6 1.0 CB D:SER470 3.0 20.6 1.0 O3G D:AOV701 3.2 46.8 1.0 O1B D:AOV701 3.3 58.2 1.0 NE2 D:GLN511 3.4 25.6 1.0 H C:GLY477 3.4 40.1 1.0 O2G D:AOV701 3.5 49.1 1.0 VG D:AOV701 3.5 65.1 1.0 OE1 D:GLN511 3.5 34.8 1.0 PB D:AOV701 3.5 42.1 1.0 HB3 D:SER470 3.6 20.6 1.0 CD D:GLN511 3.7 25.4 1.0 H D:SER470 3.7 15.5 1.0 O1A D:AOV701 3.8 33.2 1.0 HB2 C:SER476 3.9 26.9 1.0 CA D:SER470 4.1 12.4 1.0 HE21 D:GLN511 4.1 25.6 1.0 N D:SER470 4.2 15.5 1.0 O3A D:AOV701 4.2 30.5 1.0 N C:GLY477 4.3 40.1 1.0 HA C:SER476 4.3 25.5 1.0 HA D:SER470 4.3 12.4 1.0 OD1 D:ASP591 4.4 38.0 1.0 PA D:AOV701 4.5 27.0 1.0 OE2 D:GLU592 4.6 40.1 1.0 OD2 D:ASP591 4.6 33.8 1.0 HA3 C:GLY477 4.6 38.8 1.0 HB2 D:LYS469 4.7 24.8 1.0 HB2 D:GLN511 4.7 28.2 1.0 HG21 D:ILE621 4.7 30.9 1.0 O1G D:AOV701 4.8 36.2 1.0 CB C:SER476 4.8 26.9 1.0 CA C:SER476 4.9 25.5 1.0 O4G D:AOV701 4.9 43.0 1.0 O2B D:AOV701 4.9 50.0 1.0 CG D:ASP591 5.0 33.3 1.0 CG D:GLN511 5.0 30.4 1.0

Q.Tang, M.Sinclair, H.S.Hasdemir, R.A.Stein, E.Karakas, E.Tajkhorshid, H.S.Mchaourab. Asymmetric Conformations and Lipid Interactions Shape the Atp-Coupled Cycle of A Heterodimeric Abc Transporter. Nat Commun V. 14 7184 2023.
ISSN: ESSN 2041-1723
PubMed: 37938578
DOI: 10.1038/S41467-023-42937-5