Magnesium in PDB 8t42: Model of TTLL6 MTBH1-2 Bound to Microtubule

The binding sites of Magnesium atom in the Model of TTLL6 MTBH1-2 Bound to Microtubule (pdb code 8t42). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Model of TTLL6 MTBH1-2 Bound to Microtubule, PDB code: 8t42:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Model of TTLL6 MTBH1-2 Bound to Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Model of TTLL6 MTBH1-2 Bound to Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:110.4 occ:1.00 O2G A:GTP501 2.0 92.9 1.0 O3G A:GTP501 2.2 92.9 1.0 PG A:GTP501 2.4 92.9 1.0 OE1 A:GLU71 2.4 102.1 1.0 CB A:GLU71 2.7 102.1 1.0 OD2 A:ASP69 2.7 96.7 1.0 O1G A:GTP501 2.9 92.9 1.0 OD1 A:ASP98 3.1 105.8 1.0 CD A:GLU71 3.4 102.1 1.0 CG A:ASP69 3.5 96.7 1.0 OD1 A:ASP69 3.5 96.7 1.0 CG A:GLU71 3.6 102.1 1.0 CG A:ASP98 3.9 105.8 1.0 CA A:GLU71 3.9 102.1 1.0 O3B A:GTP501 3.9 92.9 1.0 N A:GLU71 4.0 102.1 1.0 OG1 A:THR145 4.1 95.8 1.0 OD2 A:ASP98 4.4 105.8 1.0 O A:GLU71 4.4 102.1 1.0 OE2 A:GLU71 4.5 102.1 1.0 C A:GLU71 4.6 102.1 1.0 CB A:ASP98 4.7 105.8 1.0 O2B A:GTP501 4.9 92.9 1.0 CB A:ASP69 4.9 96.7 1.0

Magnesium binding site 2 out of 4 in the Model of TTLL6 MTBH1-2 Bound to Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Model of TTLL6 MTBH1-2 Bound to Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:89.9 occ:1.00 O3G B:G2P501 2.0 91.1 1.0 O2G B:G2P501 2.1 91.1 1.0 PG B:G2P501 2.4 91.1 1.0 O1G B:G2P501 3.5 91.1 1.0 O3B B:G2P501 3.7 91.1 1.0 CB B:GLU69 4.2 102.7 1.0 O B:GLY96 4.4 99.3 1.0 O2A B:G2P501 4.5 91.1 1.0 O2B B:G2P501 4.5 91.1 1.0 OE1 B:GLN11 4.5 92.9 1.0 OD1 B:ASP67 4.5 98.3 1.0 OG1 B:THR143 4.6 92.9 1.0 CB B:GLN11 4.6 92.9 1.0 CG2 B:THR72 4.6 99.9 1.0 CG B:GLU69 4.8 102.7 1.0 PB B:G2P501 4.8 91.1 1.0

Magnesium binding site 3 out of 4 in the Model of TTLL6 MTBH1-2 Bound to Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Model of TTLL6 MTBH1-2 Bound to Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:114.4 occ:1.00 O3G E:G2P501 2.0 101.3 1.0 OD1 E:ASP67 2.5 106.0 1.0 CB E:GLU69 2.8 105.4 1.0 OD2 E:ASP67 3.0 106.0 1.0 CG E:ASP67 3.1 106.0 1.0 OE1 E:GLU69 3.1 105.4 1.0 PG E:G2P501 3.3 101.3 1.0 N E:GLU69 3.6 105.4 1.0 CA E:GLU69 3.7 105.4 1.0 O1G E:G2P501 3.8 101.3 1.0 CG E:GLU69 3.9 105.4 1.0 CD E:GLU69 3.9 105.4 1.0 CG2 E:THR72 4.1 107.7 1.0 O E:GLU69 4.1 105.4 1.0 O3B E:G2P501 4.2 101.3 1.0 CG2 E:THR143 4.2 103.1 1.0 C E:GLU69 4.4 105.4 1.0 OG1 E:THR72 4.5 107.7 1.0 O2G E:G2P501 4.5 101.3 1.0 CB E:ASP67 4.6 106.0 1.0 N E:LEU68 4.6 102.5 1.0 CA E:GLY96 4.7 103.7 1.0 O E:GLY96 4.7 103.7 1.0 C E:LEU68 4.7 102.5 1.0 CB E:THR72 5.0 107.7 1.0

Magnesium binding site 4 out of 4 in the Model of TTLL6 MTBH1-2 Bound to Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Model of TTLL6 MTBH1-2 Bound to Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:90.8 occ:1.00 O1G F:GTP501 2.0 97.0 1.0 OE1 F:GLU71 2.0 105.8 1.0 O3G F:GTP501 2.0 97.0 1.0 PG F:GTP501 2.4 97.0 1.0 O2B F:GTP501 2.6 97.0 1.0 PB F:GTP501 3.1 97.0 1.0 CD F:GLU71 3.1 105.8 1.0 O3A F:GTP501 3.1 97.0 1.0 O3B F:GTP501 3.2 97.0 1.0 O2G F:GTP501 3.7 97.0 1.0 OE2 F:GLU71 3.8 105.8 1.0 CB F:GLU71 4.1 105.8 1.0 CB F:GLN11 4.2 95.4 1.0 CG F:GLU71 4.2 105.8 1.0 OD2 F:ASP69 4.3 95.9 1.0 N F:GLN11 4.3 95.4 1.0 OG1 F:THR145 4.3 99.2 1.0 OE1 F:GLN11 4.3 95.4 1.0 PA F:GTP501 4.6 97.0 1.0 O1B F:GTP501 4.6 97.0 1.0 NZ B:LYS252 4.6 96.7 1.0 OD1 F:ASP69 4.6 95.9 1.0 CA F:GLN11 4.9 95.4 1.0 CG F:ASP69 4.9 95.9 1.0 O2A F:GTP501 5.0 97.0 1.0 CE B:LYS252 5.0 96.7 1.0

K.K.Mahalingan, D.A.Grotjahn, Y.Li, G.C.Lander, E.A.Zehr, A.Roll-Mecak. Structural Basis For Alpha-Tubulin-Specific and Modification State-Dependent Glutamylation. Nat.Chem.Biol. 2024.
ISSN: ESSN 1552-4469
PubMed: 38658656
DOI: 10.1038/S41589-024-01599-0