Magnesium in PDB 8teb: Structure of Mkbur

The structure of Structure of Mkbur, PDB code: 8teb was solved by T.S.Peat, J.Newman, L.Esquirol, T.Nebl, C.Scott, C.Vickers, F.Sainsbury, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.50 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	38.338, 93.034, 90.389, 90, 90.05, 90
R / Rfree (%)	18.6 / 23.8

The structure of Structure of Mkbur also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Magnesium atom in the Structure of Mkbur (pdb code 8teb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Mkbur, PDB code: 8teb:

Magnesium binding site 1 out of 1 in the Structure of Mkbur


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Mkbur within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:41.0 occ:1.00 OD2 A:ASP138 2.5 32.5 1.0 OE2 A:GLU127 2.8 25.5 1.0 OG A:SER95 3.2 30.5 1.0 O A:HOH594 3.3 39.6 1.0 CG A:ASP138 3.4 28.2 1.0 CB A:ASP138 3.4 26.4 1.0 CB A:ALA96 3.5 23.6 1.0 N A:ALA96 3.6 26.2 1.0 CD A:GLU127 3.7 26.5 1.0 CA A:GLY93 3.8 28.4 1.0 OE1 A:GLU127 3.9 26.9 1.0 O A:HOH592 4.1 27.4 1.0 CA A:ALA96 4.1 24.1 1.0 C A:GLY93 4.2 29.1 1.0 N A:SER95 4.3 29.1 1.0 O A:HOH580 4.4 42.5 1.0 CB A:SER95 4.4 28.6 1.0 O A:GLY93 4.5 26.6 1.0 C A:SER95 4.5 25.2 1.0 OD1 A:ASP138 4.6 23.9 1.0 CA A:SER95 4.6 27.8 1.0 N A:GLY93 4.8 29.3 1.0 OE1 A:GLN131 4.8 47.5 1.0 N A:SER94 4.8 29.1 1.0 CA A:ASP138 4.9 21.8 1.0

L.Esquirol, J.Newman, T.Nebl, C.Scott, C.Vickers, F.Sainsbury, T.S.Peat. Characterization of Novel Mevalonate Kinases From the Tardigrade Ramazzottius Varieornatus and the Psychrophilic Archaeon Methanococcoides Burtonii. Acta Crystallogr D Struct V. 80 203 2024BIOL.
ISSN: ISSN 2059-7983
PubMed: 38411551
DOI: 10.1107/S2059798324001360