Magnesium in PDB 8tlr: Crystal Structure of Human Hras G12C Covalently Bound to Amg 510

Protein crystallography data

The structure of Crystal Structure of Human Hras G12C Covalently Bound to Amg 510, PDB code: 8tlr was solved by J.Morstein, K.Z.Guiley, K.M.Shokat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.97 / 1.70
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 92.449, 92.449, 119.711, 90, 90, 120
R / Rfree (%) 18.4 / 21

Other elements in 8tlr:

The structure of Crystal Structure of Human Hras G12C Covalently Bound to Amg 510 also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Hras G12C Covalently Bound to Amg 510 (pdb code 8tlr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Hras G12C Covalently Bound to Amg 510, PDB code: 8tlr:

Magnesium binding site 1 out of 1 in 8tlr

Go back to Magnesium Binding Sites List in 8tlr
Magnesium binding site 1 out of 1 in the Crystal Structure of Human Hras G12C Covalently Bound to Amg 510


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Hras G12C Covalently Bound to Amg 510 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg203

b:14.6
occ:1.00
O2B A:GDP201 2.1 10.6 1.0
OG A:SER17 2.1 11.7 1.0
O A:HOH348 2.1 13.1 1.0
O A:HOH325 2.1 15.2 1.0
O A:HOH309 2.2 13.9 1.0
O A:HOH310 2.2 13.4 1.0
CB A:SER17 3.2 12.5 1.0
PB A:GDP201 3.4 11.8 1.0
O3B A:GDP201 3.6 12.6 1.0
N A:SER17 4.0 11.5 1.0
OD2 A:ASP57 4.1 17.0 1.0
O2A A:GDP201 4.1 16.1 1.0
CA A:SER17 4.1 11.9 1.0
O A:ASP33 4.2 17.4 1.0
OD1 A:ASP57 4.2 16.3 1.0
CD2 A:TYR32 4.4 18.4 1.0
CA A:PRO34 4.4 17.3 1.0
O1B A:GDP201 4.4 10.9 1.0
O3A A:GDP201 4.4 11.6 1.0
O A:THR58 4.5 14.6 1.0
O A:PRO34 4.5 20.8 1.0
CB A:ALA59 4.5 17.6 1.0
PA A:GDP201 4.6 14.8 1.0
CG A:ASP57 4.6 14.8 1.0
O A:ILE36 4.6 18.7 1.0
O1A A:GDP201 4.6 12.8 1.0
C A:PRO34 4.7 19.4 1.0
O2 A:MOV202 4.8 18.8 1.0
O A:TYR32 4.9 17.3 1.0
CE2 A:TYR32 4.9 19.9 1.0
O A:HOH332 5.0 17.9 1.0
CB A:LYS16 5.0 10.4 1.0

Reference:

J.Morstein, Y.Yang, M.Fernando, L.Zhu, V.Bowcut, M.L.Jenkins, J.T.Evans, K.Z.Guiley, D.M.Peacock, J.E.Burke, F.C.Lightstone, K.M.Shokat. Targeting Ras-, Rho-, and Rab-Family Gtpases Via A Conserved Cryptic Pocket To Be Published.
Page generated: Fri Oct 4 20:52:59 2024

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