Magnesium in PDB 8tp1: Atp-2 State of BCS1 (C7 Symmetrized)
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Atp-2 State of BCS1 (C7 Symmetrized)
(pdb code 8tp1). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the
Atp-2 State of BCS1 (C7 Symmetrized), PDB code: 8tp1:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
Magnesium binding site 1 out
of 7 in 8tp1
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Magnesium Binding Sites List in 8tp1
Magnesium binding site 1 out
of 7 in the Atp-2 State of BCS1 (C7 Symmetrized)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Atp-2 State of BCS1 (C7 Symmetrized) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg701
b:68.8
occ:1.00
|
O2G
|
A:ATP700
|
1.9
|
104.9
|
1.0
|
O2B
|
A:ATP700
|
2.2
|
101.2
|
1.0
|
OG
|
A:SER237
|
2.3
|
76.0
|
1.0
|
O3G
|
A:ATP700
|
2.6
|
100.2
|
1.0
|
PG
|
A:ATP700
|
2.6
|
123.4
|
1.0
|
O3B
|
A:ATP700
|
3.0
|
100.2
|
1.0
|
PB
|
A:ATP700
|
3.2
|
102.8
|
1.0
|
CB
|
A:SER237
|
3.4
|
74.9
|
1.0
|
O1A
|
A:ATP700
|
3.5
|
94.8
|
1.0
|
OE2
|
A:GLU282
|
3.6
|
105.6
|
1.0
|
O3A
|
A:ATP700
|
3.9
|
89.1
|
1.0
|
N
|
A:SER237
|
4.0
|
74.6
|
1.0
|
O1G
|
A:ATP700
|
4.0
|
100.2
|
1.0
|
PA
|
A:ATP700
|
4.2
|
86.6
|
1.0
|
CA
|
A:SER237
|
4.3
|
70.0
|
1.0
|
O1B
|
A:ATP700
|
4.4
|
100.6
|
1.0
|
CD
|
A:GLU282
|
4.7
|
104.9
|
1.0
|
O
|
B:ASP317
|
4.8
|
105.9
|
1.0
|
NH2
|
B:ARG343
|
4.8
|
106.9
|
1.0
|
O2A
|
A:ATP700
|
4.8
|
96.0
|
1.0
|
NH2
|
B:ARG346
|
4.9
|
95.5
|
1.0
|
CB
|
A:LYS236
|
4.9
|
63.2
|
1.0
|
CE
|
A:LYS236
|
5.0
|
69.2
|
1.0
|
|
Magnesium binding site 2 out
of 7 in 8tp1
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Magnesium Binding Sites List in 8tp1
Magnesium binding site 2 out
of 7 in the Atp-2 State of BCS1 (C7 Symmetrized)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Atp-2 State of BCS1 (C7 Symmetrized) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg701
b:122.9
occ:1.00
|
O2G
|
B:ATP700
|
1.9
|
117.1
|
1.0
|
OG
|
B:SER237
|
2.0
|
98.1
|
1.0
|
O3G
|
B:ATP700
|
2.0
|
122.9
|
1.0
|
PG
|
B:ATP700
|
2.4
|
143.0
|
1.0
|
OE2
|
B:GLU282
|
2.5
|
129.9
|
1.0
|
CB
|
B:SER237
|
3.3
|
92.9
|
1.0
|
O1G
|
B:ATP700
|
3.4
|
121.0
|
1.0
|
CD
|
B:GLU282
|
3.5
|
125.9
|
1.0
|
O3B
|
B:ATP700
|
3.6
|
118.3
|
1.0
|
O2B
|
B:ATP700
|
3.7
|
116.2
|
1.0
|
CG
|
B:GLU282
|
4.0
|
118.3
|
1.0
|
N
|
B:SER237
|
4.2
|
96.5
|
1.0
|
CA
|
B:SER237
|
4.3
|
92.4
|
1.0
|
PB
|
B:ATP700
|
4.3
|
121.0
|
1.0
|
OE1
|
B:GLU282
|
4.5
|
127.5
|
1.0
|
OG1
|
B:THR330
|
4.6
|
111.5
|
1.0
|
O1A
|
B:ATP700
|
4.8
|
115.7
|
1.0
|
OD1
|
C:ASN314
|
4.8
|
111.8
|
1.0
|
CE
|
B:LYS236
|
4.9
|
87.5
|
1.0
|
ND2
|
C:ASN314
|
5.0
|
101.5
|
1.0
|
|
Magnesium binding site 3 out
of 7 in 8tp1
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Magnesium Binding Sites List in 8tp1
Magnesium binding site 3 out
of 7 in the Atp-2 State of BCS1 (C7 Symmetrized)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Atp-2 State of BCS1 (C7 Symmetrized) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg701
b:106.7
occ:1.00
|
O2G
|
C:ATP700
|
1.9
|
103.6
|
1.0
|
OG
|
C:SER237
|
2.0
|
86.5
|
1.0
|
O3G
|
C:ATP700
|
2.0
|
109.5
|
1.0
|
PG
|
C:ATP700
|
2.4
|
129.7
|
1.0
|
OE2
|
C:GLU282
|
2.5
|
115.8
|
1.0
|
CB
|
C:SER237
|
3.3
|
82.0
|
1.0
|
O1G
|
C:ATP700
|
3.4
|
109.6
|
1.0
|
CD
|
C:GLU282
|
3.5
|
113.0
|
1.0
|
O3B
|
C:ATP700
|
3.6
|
106.6
|
1.0
|
O2B
|
C:ATP700
|
3.6
|
102.5
|
1.0
|
CG
|
C:GLU282
|
4.0
|
102.9
|
1.0
|
N
|
C:SER237
|
4.2
|
82.5
|
1.0
|
CA
|
C:SER237
|
4.3
|
82.2
|
1.0
|
PB
|
C:ATP700
|
4.3
|
109.6
|
1.0
|
OE1
|
C:GLU282
|
4.5
|
118.2
|
1.0
|
O1A
|
C:ATP700
|
4.7
|
104.2
|
1.0
|
OG1
|
C:THR330
|
4.8
|
95.9
|
1.0
|
OD1
|
D:ASN314
|
4.8
|
121.3
|
1.0
|
CE
|
C:LYS236
|
4.9
|
77.0
|
1.0
|
|
Magnesium binding site 4 out
of 7 in 8tp1
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Magnesium Binding Sites List in 8tp1
Magnesium binding site 4 out
of 7 in the Atp-2 State of BCS1 (C7 Symmetrized)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Atp-2 State of BCS1 (C7 Symmetrized) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg701
b:116.4
occ:1.00
|
O2G
|
D:ATP700
|
1.9
|
114.7
|
1.0
|
OG
|
D:SER237
|
2.0
|
91.1
|
1.0
|
O3G
|
D:ATP700
|
2.0
|
118.6
|
1.0
|
PG
|
D:ATP700
|
2.4
|
137.8
|
1.0
|
OE2
|
D:GLU282
|
2.5
|
124.4
|
1.0
|
CB
|
D:SER237
|
3.3
|
87.1
|
1.0
|
O1G
|
D:ATP700
|
3.4
|
118.5
|
1.0
|
CD
|
D:GLU282
|
3.5
|
119.3
|
1.0
|
O3B
|
D:ATP700
|
3.6
|
112.4
|
1.0
|
O2B
|
D:ATP700
|
3.7
|
110.9
|
1.0
|
CG
|
D:GLU282
|
4.0
|
111.6
|
1.0
|
N
|
D:SER237
|
4.2
|
91.9
|
1.0
|
CA
|
D:SER237
|
4.3
|
88.0
|
1.0
|
PB
|
D:ATP700
|
4.4
|
117.2
|
1.0
|
OE1
|
D:GLU282
|
4.6
|
122.7
|
1.0
|
O1A
|
D:ATP700
|
4.7
|
111.7
|
1.0
|
OG1
|
D:THR330
|
4.8
|
102.2
|
1.0
|
OD1
|
E:ASN314
|
4.8
|
120.0
|
1.0
|
CE
|
D:LYS236
|
4.9
|
83.8
|
1.0
|
|
Magnesium binding site 5 out
of 7 in 8tp1
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Magnesium Binding Sites List in 8tp1
Magnesium binding site 5 out
of 7 in the Atp-2 State of BCS1 (C7 Symmetrized)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Atp-2 State of BCS1 (C7 Symmetrized) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg701
b:116.3
occ:1.00
|
O2G
|
E:ATP700
|
1.9
|
113.5
|
1.0
|
OG
|
E:SER237
|
2.0
|
93.2
|
1.0
|
O3G
|
E:ATP700
|
2.0
|
118.7
|
1.0
|
PG
|
E:ATP700
|
2.4
|
139.2
|
1.0
|
OE2
|
E:GLU282
|
2.6
|
124.5
|
1.0
|
CB
|
E:SER237
|
3.3
|
87.3
|
1.0
|
O1G
|
E:ATP700
|
3.4
|
117.6
|
1.0
|
O3B
|
E:ATP700
|
3.6
|
115.4
|
1.0
|
CD
|
E:GLU282
|
3.6
|
120.7
|
1.0
|
O2B
|
E:ATP700
|
3.6
|
112.0
|
1.0
|
CG
|
E:GLU282
|
4.0
|
111.8
|
1.0
|
N
|
E:SER237
|
4.2
|
90.7
|
1.0
|
CA
|
E:SER237
|
4.3
|
87.9
|
1.0
|
PB
|
E:ATP700
|
4.3
|
118.3
|
1.0
|
OE1
|
E:GLU282
|
4.6
|
124.8
|
1.0
|
O1A
|
E:ATP700
|
4.7
|
110.5
|
1.0
|
OG1
|
E:THR330
|
4.8
|
100.9
|
1.0
|
OD1
|
F:ASN314
|
4.8
|
100.2
|
1.0
|
CE
|
E:LYS236
|
4.9
|
84.2
|
1.0
|
|
Magnesium binding site 6 out
of 7 in 8tp1
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Magnesium Binding Sites List in 8tp1
Magnesium binding site 6 out
of 7 in the Atp-2 State of BCS1 (C7 Symmetrized)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Atp-2 State of BCS1 (C7 Symmetrized) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg701
b:99.3
occ:1.00
|
O2G
|
F:ATP700
|
1.9
|
93.5
|
1.0
|
OG
|
F:SER237
|
2.0
|
77.7
|
1.0
|
O3G
|
F:ATP700
|
2.0
|
98.9
|
1.0
|
PG
|
F:ATP700
|
2.4
|
119.2
|
1.0
|
OE2
|
F:GLU282
|
2.5
|
105.1
|
1.0
|
CB
|
F:SER237
|
3.3
|
72.4
|
1.0
|
O1G
|
F:ATP700
|
3.4
|
95.8
|
1.0
|
CD
|
F:GLU282
|
3.5
|
101.5
|
1.0
|
O3B
|
F:ATP700
|
3.6
|
95.5
|
1.0
|
O2B
|
F:ATP700
|
3.7
|
90.7
|
1.0
|
CG
|
F:GLU282
|
4.0
|
93.5
|
1.0
|
N
|
F:SER237
|
4.2
|
75.4
|
1.0
|
CA
|
F:SER237
|
4.3
|
71.3
|
1.0
|
PB
|
F:ATP700
|
4.3
|
97.6
|
1.0
|
OE1
|
F:GLU282
|
4.5
|
105.2
|
1.0
|
OG1
|
F:THR330
|
4.6
|
89.8
|
1.0
|
O1A
|
F:ATP700
|
4.7
|
92.4
|
1.0
|
OD1
|
G:ASN314
|
4.8
|
125.5
|
1.0
|
CE
|
F:LYS236
|
4.9
|
71.0
|
1.0
|
ND2
|
G:ASN314
|
5.0
|
113.8
|
1.0
|
|
Magnesium binding site 7 out
of 7 in 8tp1
Go back to
Magnesium Binding Sites List in 8tp1
Magnesium binding site 7 out
of 7 in the Atp-2 State of BCS1 (C7 Symmetrized)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Atp-2 State of BCS1 (C7 Symmetrized) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg701
b:90.6
occ:1.00
|
O2G
|
G:ATP700
|
1.9
|
96.7
|
1.0
|
OG
|
G:SER237
|
2.0
|
98.1
|
1.0
|
O3G
|
G:ATP700
|
2.0
|
100.4
|
1.0
|
PG
|
G:ATP700
|
2.4
|
120.5
|
1.0
|
OE2
|
G:GLU282
|
2.5
|
127.1
|
1.0
|
CB
|
G:SER237
|
3.3
|
90.0
|
1.0
|
O1G
|
G:ATP700
|
3.4
|
108.6
|
1.0
|
CD
|
G:GLU282
|
3.5
|
121.3
|
1.0
|
O3B
|
G:ATP700
|
3.6
|
99.8
|
1.0
|
O2B
|
G:ATP700
|
3.6
|
102.8
|
1.0
|
CG
|
G:GLU282
|
4.0
|
111.3
|
1.0
|
N
|
G:SER237
|
4.2
|
92.1
|
1.0
|
CA
|
G:SER237
|
4.3
|
89.5
|
1.0
|
PB
|
G:ATP700
|
4.3
|
108.8
|
1.0
|
OE1
|
G:GLU282
|
4.5
|
126.7
|
1.0
|
OG1
|
G:THR330
|
4.6
|
107.6
|
1.0
|
O1A
|
G:ATP700
|
4.7
|
95.8
|
1.0
|
OD1
|
A:ASN314
|
4.8
|
103.3
|
1.0
|
CE
|
G:LYS236
|
4.9
|
86.5
|
1.0
|
|
Reference:
J.Zhan,
D.Xia.
Concerted BCS1 Translocation Mechanism To Be Published.
Page generated: Fri Oct 4 20:53:28 2024
|