Magnesium in PDB 8tqx: Crystal Structure of the Zika Virus Stem-Loop A (Sla) Bottom Stem

The structure of Crystal Structure of the Zika Virus Stem-Loop A (Sla) Bottom Stem, PDB code: 8tqx was solved by J.Tipo, K.Gottipati, K.H.Choi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.83 / 2.09
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	28.322, 41.947, 97.659, 90, 90, 90
R / Rfree (%)	24.9 / 27.8

The binding sites of Magnesium atom in the Crystal Structure of the Zika Virus Stem-Loop A (Sla) Bottom Stem (pdb code 8tqx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Zika Virus Stem-Loop A (Sla) Bottom Stem, PDB code: 8tqx:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Zika Virus Stem-Loop A (Sla) Bottom Stem


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Zika Virus Stem-Loop A (Sla) Bottom Stem within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:71.0 occ:1.00 N7 A:G7 3.7 58.5 1.0 O6 A:G7 4.0 52.4 1.0 N7 A:G8 4.2 58.0 1.0 O6 A:G8 4.4 52.9 1.0 C5 A:G7 4.5 56.7 1.0 C6 A:G7 4.5 54.0 1.0 O4 A:U6 4.7 59.8 1.0 C8 A:G7 4.7 55.8 1.0 C5 A:U6 4.7 59.0 1.0 C4 A:U6 4.8 59.5 1.0 C5 A:G8 5.0 57.5 1.0

J.Tipo, K.Gottipati, K.H.Choi. High-Resolution Rna Tertiary Structures in Zika Virus Stem-Loop A For the Development of Inhibitory Small Molecules. Rna 2024.
ISSN: ESSN 1469-9001
PubMed: 38383158
DOI: 10.1261/RNA.079796.123