Magnesium in PDB 8trn: Actin 1 From T. Gondii in Filaments Bound to Mgadp and Jasplakinolide

The structure of Actin 1 From T. Gondii in Filaments Bound to Mgadp and Jasplakinolide also contains other interesting chemical elements:

Bromine

(Br)

3 atoms

The binding sites of Magnesium atom in the Actin 1 From T. Gondii in Filaments Bound to Mgadp and Jasplakinolide (pdb code 8trn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Actin 1 From T. Gondii in Filaments Bound to Mgadp and Jasplakinolide, PDB code: 8trn:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Actin 1 From T. Gondii in Filaments Bound to Mgadp and Jasplakinolide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Actin 1 From T. Gondii in Filaments Bound to Mgadp and Jasplakinolide within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:34.6 occ:1.00 O1B A:ADP402 2.0 57.5 1.0 PB A:ADP402 3.5 47.6 1.0 NZ A:LYS19 3.9 44.7 1.0 OE1 A:GLN138 4.1 58.6 1.0 O3B A:ADP402 4.1 47.2 1.0 NE2 A:GLN138 4.2 44.9 1.0 O3A A:ADP402 4.3 53.1 1.0 CD A:GLN138 4.3 45.6 1.0 OD2 A:ASP12 4.3 58.8 1.0 OD1 A:ASP12 4.3 50.7 1.0 O2B A:ADP402 4.4 39.7 1.0 O1A A:ADP402 4.4 47.2 1.0 OD2 A:ASP155 4.5 58.8 1.0 CA A:GLY14 4.7 48.2 1.0 CG A:ASP12 4.8 52.9 1.0 PA A:ADP402 4.8 52.8 1.0 CA A:GLY157 5.0 34.7 1.0

Magnesium binding site 2 out of 3 in the Actin 1 From T. Gondii in Filaments Bound to Mgadp and Jasplakinolide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Actin 1 From T. Gondii in Filaments Bound to Mgadp and Jasplakinolide within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:29.1 occ:1.00 O1B B:ADP402 2.0 49.1 1.0 PB B:ADP402 3.5 43.0 1.0 NZ B:LYS19 3.9 38.6 1.0 OE1 B:GLN138 4.1 51.5 1.0 O3B B:ADP402 4.1 45.3 1.0 NE2 B:GLN138 4.2 40.7 1.0 O3A B:ADP402 4.3 44.4 1.0 CD B:GLN138 4.3 42.6 1.0 OD2 B:ASP12 4.3 46.2 1.0 OD1 B:ASP12 4.3 44.3 1.0 O2B B:ADP402 4.4 36.4 1.0 O1A B:ADP402 4.4 47.2 1.0 OD2 B:ASP155 4.5 53.8 1.0 CA B:GLY14 4.7 40.1 1.0 CG B:ASP12 4.8 46.3 1.0 PA B:ADP402 4.8 45.9 1.0 CA B:GLY157 5.0 30.7 1.0

Magnesium binding site 3 out of 3 in the Actin 1 From T. Gondii in Filaments Bound to Mgadp and Jasplakinolide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Actin 1 From T. Gondii in Filaments Bound to Mgadp and Jasplakinolide within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:29.8 occ:1.00 O1B C:ADP402 2.0 49.3 1.0 PB C:ADP402 3.5 48.0 1.0 NZ C:LYS19 3.9 35.2 1.0 OE1 C:GLN138 4.1 52.4 1.0 O3B C:ADP402 4.1 49.0 1.0 NE2 C:GLN138 4.2 48.9 1.0 O3A C:ADP402 4.3 44.7 1.0 CD C:GLN138 4.3 45.4 1.0 OD2 C:ASP12 4.3 49.9 1.0 OD1 C:ASP12 4.3 52.5 1.0 O2B C:ADP402 4.4 42.1 1.0 O1A C:ADP402 4.4 46.6 1.0 OD2 C:ASP155 4.5 56.4 1.0 CA C:GLY14 4.7 46.0 1.0 CG C:ASP12 4.8 51.5 1.0 PA C:ADP402 4.8 41.9 1.0 CA C:GLY157 5.0 36.9 1.0

K.L.Hvorecny, T.E.Sladewski, E.M.De La Cruz, J.M.Kollman, A.T.Heaslip. Toxoplasma Gondii Actin Filaments Are Tuned For Rapid Disassembly and Turnover. Nat Commun V. 15 1840 2024.
ISSN: ESSN 2041-1723
PubMed: 38418447
DOI: 10.1038/S41467-024-46111-3