Magnesium in PDB 8ts1: Cryo-Em Structure of Human MRS2 with MG2+

The binding sites of Magnesium atom in the Cryo-Em Structure of Human MRS2 with MG2+ (pdb code 8ts1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Cryo-Em Structure of Human MRS2 with MG2+, PDB code: 8ts1:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in the Cryo-Em Structure of Human MRS2 with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human MRS2 with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:80.0 occ:1.00 HD22 D:ASN362 3.0 141.6 1.0 HD22 C:ASN362 3.1 141.6 1.0 HD22 E:ASN362 3.1 141.6 1.0 HD22 B:ASN362 3.2 141.6 1.0 HD22 A:ASN362 3.2 141.6 1.0 OD1 E:ASN362 3.3 143.2 1.0 OD1 D:ASN362 3.4 143.2 1.0 OD1 A:ASN362 3.5 143.2 1.0 OD1 C:ASN362 3.5 143.2 1.0 OD1 B:ASN362 3.6 143.2 1.0 ND2 D:ASN362 3.7 142.0 1.0 ND2 E:ASN362 3.8 142.0 1.0 ND2 C:ASN362 3.8 142.0 1.0 ND2 A:ASN362 3.9 142.0 1.0 CG D:ASN362 3.9 142.7 1.0 ND2 B:ASN362 3.9 142.0 1.0 CG E:ASN362 4.0 142.7 1.0 CG C:ASN362 4.1 142.7 1.0 CG A:ASN362 4.1 142.7 1.0 CG B:ASN362 4.2 142.7 1.0 HD21 D:ASN362 4.4 141.5 1.0 HD21 E:ASN362 4.5 141.5 1.0 HD21 C:ASN362 4.5 141.5 1.0 HD21 A:ASN362 4.7 141.5 1.0 HD21 B:ASN362 4.7 141.5 1.0

Magnesium binding site 2 out of 7 in the Cryo-Em Structure of Human MRS2 with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human MRS2 with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:30.0 occ:1.00 HH12 E:ARG332 3.9 40.8 1.0 HH12 D:ARG332 3.9 40.8 1.0 HH12 A:ARG332 3.9 40.8 1.0 HH12 C:ARG332 3.9 40.8 1.0 HH12 B:ARG332 3.9 40.8 1.0 NH1 E:ARG332 4.6 52.9 1.0 NH1 D:ARG332 4.6 52.9 1.0 NH1 A:ARG332 4.6 52.9 1.0 NH1 B:ARG332 4.6 52.9 1.0 NH1 C:ARG332 4.6 52.9 1.0 HH11 E:ARG332 4.8 39.7 1.0 HH11 A:ARG332 4.8 39.7 1.0 HH11 D:ARG332 4.8 39.7 1.0 HH11 B:ARG332 4.8 39.7 1.0 HH11 C:ARG332 4.8 39.7 1.0 OD2 E:ASP329 4.9 53.1 1.0 OD2 A:ASP329 4.9 53.1 1.0 OD2 D:ASP329 4.9 53.1 1.0 OD2 B:ASP329 4.9 53.1 1.0 OD2 C:ASP329 4.9 53.1 1.0

Magnesium binding site 3 out of 7 in the Cryo-Em Structure of Human MRS2 with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Human MRS2 with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg603 b:30.0 occ:1.00 OE1 A:GLU138 3.8 75.3 1.0 HB3 A:GLU243 3.9 56.9 1.0 OD1 A:ASP247 4.0 70.5 1.0 HG2 A:GLU243 4.2 57.4 1.0 OE2 E:GLU312 4.3 54.4 1.0 OE2 A:GLU138 4.6 69.6 1.0 CD A:GLU138 4.6 73.5 1.0 OE1 E:GLU312 4.6 59.2 1.0 CB A:GLU243 4.7 54.3 1.0 HA A:GLU243 4.7 56.2 1.0 HG22 A:THR246 4.8 55.4 1.0 CG A:GLU243 4.8 58.8 1.0 CG A:ASP247 4.9 70.9 1.0 CD E:GLU312 4.9 56.3 1.0 OD2 A:ASP247 5.0 72.7 1.0

Magnesium binding site 4 out of 7 in the Cryo-Em Structure of Human MRS2 with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Human MRS2 with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:30.0 occ:1.00 OE1 B:GLU138 3.9 75.3 1.0 HB3 B:GLU243 4.0 56.9 1.0 OD1 B:ASP247 4.0 70.5 1.0 HG2 B:GLU243 4.2 57.4 1.0 OE2 A:GLU312 4.3 54.4 1.0 OE2 B:GLU138 4.6 69.6 1.0 CD B:GLU138 4.6 73.5 1.0 OE1 A:GLU312 4.6 59.2 1.0 HA B:GLU243 4.8 56.2 1.0 CB B:GLU243 4.8 54.3 1.0 HG22 B:THR246 4.8 55.4 1.0 CG B:GLU243 4.9 58.8 1.0 CD A:GLU312 4.9 56.3 1.0 CG B:ASP247 5.0 70.9 1.0 HG11 B:VAL123 5.0 66.2 1.0

Magnesium binding site 5 out of 7 in the Cryo-Em Structure of Human MRS2 with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Human MRS2 with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:30.0 occ:1.00 OE1 C:GLU138 3.8 75.3 1.0 HB3 C:GLU243 4.0 56.9 1.0 OD1 C:ASP247 4.0 70.5 1.0 HG2 C:GLU243 4.2 57.4 1.0 OE2 B:GLU312 4.3 54.4 1.0 OE2 C:GLU138 4.5 69.6 1.0 CD C:GLU138 4.5 73.5 1.0 OE1 B:GLU312 4.6 59.2 1.0 HA C:GLU243 4.8 56.2 1.0 CB C:GLU243 4.8 54.3 1.0 HG22 C:THR246 4.8 55.4 1.0 CG C:GLU243 4.9 58.8 1.0 CG C:ASP247 4.9 70.9 1.0 CD B:GLU312 4.9 56.3 1.0 OD2 C:ASP247 5.0 72.7 1.0 HG11 C:VAL123 5.0 66.2 1.0

Magnesium binding site 6 out of 7 in the Cryo-Em Structure of Human MRS2 with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Human MRS2 with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:30.0 occ:1.00 OE1 D:GLU138 3.8 75.3 1.0 HB3 D:GLU243 3.9 56.9 1.0 OD1 D:ASP247 4.0 70.5 1.0 HG2 D:GLU243 4.2 57.4 1.0 OE2 C:GLU312 4.4 54.4 1.0 CD D:GLU138 4.5 73.5 1.0 OE2 D:GLU138 4.6 69.6 1.0 OE1 C:GLU312 4.6 59.2 1.0 CB D:GLU243 4.7 54.3 1.0 HA D:GLU243 4.8 56.2 1.0 CG D:GLU243 4.8 58.8 1.0 HG22 D:THR246 4.9 55.4 1.0 CG D:ASP247 4.9 70.9 1.0 OD2 D:ASP247 5.0 72.7 1.0 CD C:GLU312 5.0 56.3 1.0

Magnesium binding site 7 out of 7 in the Cryo-Em Structure of Human MRS2 with MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Human MRS2 with MG2+ within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:30.0 occ:1.00 OE1 E:GLU138 3.9 75.3 1.0 HB3 E:GLU243 4.0 56.9 1.0 OD1 E:ASP247 4.0 70.5 1.0 HG2 E:GLU243 4.2 57.4 1.0 OE2 D:GLU312 4.3 54.4 1.0 OE2 E:GLU138 4.6 69.6 1.0 CD E:GLU138 4.6 73.5 1.0 OE1 D:GLU312 4.6 59.2 1.0 HA E:GLU243 4.8 56.2 1.0 HG22 E:THR246 4.8 55.4 1.0 CB E:GLU243 4.8 54.3 1.0 CG E:GLU243 4.9 58.8 1.0 CD D:GLU312 4.9 56.3 1.0 CG E:ASP247 4.9 70.9 1.0 HG11 E:VAL123 5.0 66.2 1.0

Z.He, Y.Tu, C.Tsai, J.W.Mount, J.Zhang, M.Tsai, P.Yuan. Human Mitochondrial MRS2 Is A CA2+-Regulated Nonselective Cation Channel To Be Published.