Magnesium in PDB 8tsh: S. Thermodepolymerans Kpsmt(E151Q)-Kpse in Complex with Atp

The binding sites of Magnesium atom in the S. Thermodepolymerans Kpsmt(E151Q)-Kpse in Complex with Atp (pdb code 8tsh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the S. Thermodepolymerans Kpsmt(E151Q)-Kpse in Complex with Atp, PDB code: 8tsh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the S. Thermodepolymerans Kpsmt(E151Q)-Kpse in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of S. Thermodepolymerans Kpsmt(E151Q)-Kpse in Complex with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:54.4 occ:1.00 CB A:SER45 2.7 84.9 1.0 O1G A:ATP301 3.1 86.5 1.0 OD1 A:ASP150 3.5 76.6 1.0 OG A:SER45 3.6 83.4 1.0 CA A:SER45 3.6 80.4 1.0 O3B A:ATP301 3.6 91.6 1.0 N A:SER45 3.8 77.5 1.0 O3A A:ATP301 3.9 90.6 1.0 PG A:ATP301 3.9 84.2 1.0 OD2 A:ASP150 4.0 73.6 1.0 CG A:ASP150 4.2 73.2 1.0 PB A:ATP301 4.3 97.7 1.0 O2B A:ATP301 4.4 76.7 1.0 NE2 A:GLN151 4.4 66.0 1.0 OG B:SER128 4.5 68.9 1.0 PA A:ATP301 4.6 89.6 1.0 O1A A:ATP301 4.6 90.6 1.0 O2A A:ATP301 4.7 85.9 1.0 C A:LYS44 4.8 74.0 1.0 O3G A:ATP301 4.9 77.5 1.0 C A:SER45 5.0 80.6 1.0

Magnesium binding site 2 out of 2 in the S. Thermodepolymerans Kpsmt(E151Q)-Kpse in Complex with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of S. Thermodepolymerans Kpsmt(E151Q)-Kpse in Complex with Atp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:73.5 occ:1.00 OG B:SER45 2.0 77.6 1.0 O2B B:ATP301 2.5 77.2 1.0 CB B:SER45 3.2 70.3 1.0 O3G B:ATP301 3.3 76.1 1.0 PB B:ATP301 3.4 77.3 1.0 O3B B:ATP301 3.5 83.5 1.0 O3A B:ATP301 3.6 82.7 1.0 OG A:SER128 3.7 59.7 0.0 OD1 B:ASP150 3.8 74.2 1.0 NE2 B:GLN151 3.9 66.5 1.0 PG B:ATP301 4.1 78.4 1.0 OD2 B:ASP150 4.2 73.3 1.0 CB A:SER128 4.3 58.5 1.0 CA B:SER45 4.4 61.9 1.0 CG B:ASP150 4.4 74.6 1.0 N B:SER45 4.6 65.4 1.0 OG A:SER127 4.7 60.4 1.0 O2G B:ATP301 4.7 79.8 1.0 PA B:ATP301 4.8 80.6 1.0 O1B B:ATP301 4.8 75.8 1.0 O B:LYS44 4.9 81.3 1.0 N A:SER128 4.9 64.6 1.0 O2A B:ATP301 4.9 80.8 1.0 C B:LYS44 4.9 65.1 1.0 CD B:GLN151 5.0 69.4 1.0

J.Kuklewicz, J.Zimmer. Molecular Insights Into Capsular Polysaccharide Secretion. Nature 2024.
ISSN: ESSN 1476-4687
PubMed: 38570679
DOI: 10.1038/S41586-024-07248-9