Magnesium in PDB 8tvy: Cryo-Em Structure of Cpd Lesion Containing Rna Polymerase II Elongation Complex with RAD26 and ELF1 (Closed State)

Enzymatic activity of Cryo-Em Structure of Cpd Lesion Containing Rna Polymerase II Elongation Complex with RAD26 and ELF1 (Closed State)

All present enzymatic activity of Cryo-Em Structure of Cpd Lesion Containing Rna Polymerase II Elongation Complex with RAD26 and ELF1 (Closed State):
2.7.7.6;

Other elements in 8tvy:

The structure of Cryo-Em Structure of Cpd Lesion Containing Rna Polymerase II Elongation Complex with RAD26 and ELF1 (Closed State) also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Cpd Lesion Containing Rna Polymerase II Elongation Complex with RAD26 and ELF1 (Closed State) (pdb code 8tvy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Cpd Lesion Containing Rna Polymerase II Elongation Complex with RAD26 and ELF1 (Closed State), PDB code: 8tvy:

Magnesium binding site 1 out of 1 in 8tvy

Go back to Magnesium Binding Sites List in 8tvy
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Cpd Lesion Containing Rna Polymerase II Elongation Complex with RAD26 and ELF1 (Closed State)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Cpd Lesion Containing Rna Polymerase II Elongation Complex with RAD26 and ELF1 (Closed State) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1803

b:55.8
occ:1.00
OD1 A:ASP481 2.1 33.0 1.0
OD1 A:ASP483 2.1 32.7 1.0
OD2 A:ASP483 2.4 32.7 1.0
CG A:ASP483 2.6 32.7 1.0
CG A:ASP481 2.9 33.0 1.0
OD1 A:ASP485 2.9 30.9 1.0
OD2 A:ASP481 3.0 33.0 1.0
OD2 A:ASP485 3.4 30.9 1.0
CG A:ASP485 3.5 30.9 1.0
O3' R:A10 3.5 77.2 1.0
H A:ASP483 3.9 32.7 1.0
H A:ASP481 4.0 33.0 1.0
CB A:ASP483 4.1 32.7 1.0
CB A:ASP481 4.3 33.0 1.0
HB3 A:ASP483 4.4 32.7 1.0
HH21 A:ARG446 4.4 34.4 1.0
HB2 A:ASP483 4.6 32.7 1.0
N A:ASP481 4.6 33.0 1.0
N A:ASP483 4.6 32.7 1.0
H A:ASP485 4.6 30.9 1.0
HB2 A:ASP481 4.7 33.0 1.0
CA A:ASP483 4.8 32.7 1.0
O A:ASP481 4.8 33.0 1.0
C A:ASP481 4.8 33.0 1.0
CA A:ASP481 4.8 33.0 1.0
CB A:ASP485 4.9 30.9 1.0
HB3 A:ASP481 4.9 33.0 1.0
C3' R:A10 4.9 78.2 1.0
C A:ASP483 5.0 32.7 1.0
N A:ASP485 5.0 30.9 1.0

Reference:

R.D.Sarsam, J.Xu, I.Lahiri, W.Gong, Q.Li, J.Oh, Z.Zhou, P.Hou, J.Chong, N.Hao, S.Li, D.Wang, A.E.Leschziner. ELF1 Promotes RAD26'S Interaction with Lesion-Arrested Pol II For Transcription-Coupled Repair. Proc.Natl.Acad.Sci.Usa V. 121 45121 2024.
ISSN: ESSN 1091-6490
PubMed: 38194460
DOI: 10.1073/PNAS.2314245121
Page generated: Fri Oct 4 20:58:58 2024

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