Magnesium in PDB 8txo: E. Coli Dna-Directed Rna Polymerase Transcription Elongation Complex Bound to the Unnatural Dz-Ptp Base Pair in the Active Site

Enzymatic activity of E. Coli Dna-Directed Rna Polymerase Transcription Elongation Complex Bound to the Unnatural Dz-Ptp Base Pair in the Active Site

All present enzymatic activity of E. Coli Dna-Directed Rna Polymerase Transcription Elongation Complex Bound to the Unnatural Dz-Ptp Base Pair in the Active Site:
2.7.7.6;

Other elements in 8txo:

The structure of E. Coli Dna-Directed Rna Polymerase Transcription Elongation Complex Bound to the Unnatural Dz-Ptp Base Pair in the Active Site also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the E. Coli Dna-Directed Rna Polymerase Transcription Elongation Complex Bound to the Unnatural Dz-Ptp Base Pair in the Active Site (pdb code 8txo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the E. Coli Dna-Directed Rna Polymerase Transcription Elongation Complex Bound to the Unnatural Dz-Ptp Base Pair in the Active Site, PDB code: 8txo:

Magnesium binding site 1 out of 1 in 8txo

Go back to Magnesium Binding Sites List in 8txo
Magnesium binding site 1 out of 1 in the E. Coli Dna-Directed Rna Polymerase Transcription Elongation Complex Bound to the Unnatural Dz-Ptp Base Pair in the Active Site


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E. Coli Dna-Directed Rna Polymerase Transcription Elongation Complex Bound to the Unnatural Dz-Ptp Base Pair in the Active Site within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg1503

b:21.4
occ:1.00
CG J:ASP462 1.8 20.8 1.0
CB J:ASP462 1.8 20.8 1.0
OD1 J:ASP464 2.2 19.4 1.0
OD2 J:ASP462 2.3 20.8 1.0
OD1 J:ASP462 2.3 20.8 1.0
OD2 J:ASP464 2.3 19.4 1.0
CG J:ASP464 2.5 19.4 1.0
O02 J:S9F1504 2.7 27.1 1.0
CA J:ASP462 3.3 20.8 1.0
OD1 J:ASP460 3.3 19.4 1.0
C J:ASP462 3.8 20.8 1.0
CG J:ASP460 3.9 19.4 1.0
CB J:ASP464 4.0 19.4 1.0
P01 J:S9F1504 4.0 27.1 1.0
N J:ASP462 4.0 20.8 1.0
CB J:ASP460 4.1 19.4 1.0
O J:ASP462 4.1 20.8 1.0
O J:ASP460 4.2 19.4 1.0
N J:ASP464 4.3 19.4 1.0
O03 J:S9F1504 4.3 27.1 1.0
C3' R:G9 4.3 24.4 1.0
C5' R:G9 4.4 24.4 1.0
C4' R:G9 4.5 24.4 1.0
CA J:ASP464 4.6 19.4 1.0
N J:GLY463 4.6 19.0 1.0
C J:ASP460 4.6 19.4 1.0
O10 J:S9F1504 4.7 27.1 1.0
O13 J:S9F1504 4.8 27.1 1.0
OD2 J:ASP460 4.8 19.4 1.0
O08 J:S9F1504 4.9 27.1 1.0
CA J:ASP460 4.9 19.4 1.0
C J:PHE461 5.0 17.8 1.0
C J:GLY463 5.0 19.0 1.0

Reference:

S.Aiyer, P.R.Baldwin, S.M.Tan, Z.Shan, J.Oh, A.Mehrani, M.E.Bowman, G.Louie, D.O.Passos, S.Dordevic-Marquardt, M.Mietzsch, J.A.Hull, S.Hoshika, B.A.Barad, D.A.Grotjahn, R.Mckenna, M.Agbandje-Mckenna, S.A.Benner, J.A.P.Noel, D.Wang, Y.Z.Tan, D.Lyumkis. Overcoming Resolution Attenuation During Tilted Cryo-Em Data Collection. Nat Commun V. 15 389 2024.
ISSN: ESSN 2041-1723
PubMed: 38195598
DOI: 10.1038/S41467-023-44555-7
Page generated: Fri Oct 4 21:07:27 2024

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