Magnesium in PDB 8u00: Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides

The structure of Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides, PDB code: 8u00 was solved by Y.Kim, N.Maltseva, M.Endres, A.Joachimiak, Center For Structural Biologyof Infectious Diseases (Csbid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.10 / 1.85
Space group	P 42
Cell size a, b, c (Å), α, β, γ (°)	85.341, 85.341, 78.844, 90, 90, 90
R / Rfree (%)	18.9 / 22.5

The structure of Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides also contains other interesting chemical elements:

Nickel	(Ni)	2 atoms
Zinc	(Zn)	6 atoms
Chlorine	(Cl)	4 atoms

The binding sites of Magnesium atom in the Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides (pdb code 8u00). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides, PDB code: 8u00:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg305 b:55.9 occ:1.00 O A:HOH407 2.0 64.3 1.0 OD1 A:ASP231 2.2 62.1 1.0 O A:HOH448 2.3 55.3 1.0 OD2 A:ASP231 2.3 64.4 1.0 CG A:ASP231 2.6 57.7 1.0 O A:HOH447 2.7 66.4 1.0 CB A:ASP231 4.1 58.6 1.0 OG1 A:THR191 4.2 56.9 1.0 CG B:PRO189 4.4 70.9 1.0 CD B:PRO189 4.7 79.5 1.0 N A:ASP231 4.7 54.6 1.0 CA A:ASP231 4.7 55.1 1.0 CG2 A:THR191 4.9 56.9 1.0 N A:THR191 4.9 61.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg305 b:56.0 occ:1.00 O B:HOH413 2.1 62.3 1.0 O B:HOH457 2.2 56.2 1.0 OD1 B:ASP231 2.3 61.4 1.0 OD2 B:ASP231 2.4 62.7 1.0 O B:HOH424 2.6 60.8 1.0 CG B:ASP231 2.6 58.2 1.0 OG1 B:THR191 4.0 57.6 1.0 CB B:ASP231 4.1 57.0 1.0 CG A:PRO189 4.5 71.8 1.0 CD A:PRO189 4.6 76.0 1.0 N B:ASP231 4.6 53.3 1.0 CA B:ASP231 4.7 54.4 1.0 N B:THR191 4.9 59.5 1.0 CG2 B:THR191 4.9 54.6 1.0

Y.Kim, N.Maltseva, M.Endres, A.Joachimiak. Crystal Structure of Metallo-Beta-Lactamase Superfamily Protein From Caulobacter Vibrioides To Be Published.