Magnesium in PDB 8u3k: Ddmde Handover Complex

The binding sites of Magnesium atom in the Ddmde Handover Complex (pdb code 8u3k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Ddmde Handover Complex, PDB code: 8u3k:

Magnesium binding site 1 out of 1 in the Ddmde Handover Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ddmde Handover Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg101 b:93.4 occ:1.00 OP1 D:DA3 2.0 94.1 1.0 P D:DG1 3.4 111.6 1.0 P D:DA3 3.5 94.1 1.0 OE2 E:GLU401 3.6 107.5 1.0 OP1 D:DG1 3.8 111.6 1.0 C5' D:DA3 3.9 94.1 1.0 OP2 D:DG1 3.9 111.6 1.0 O5' D:DA3 4.0 94.1 1.0 OE2 E:GLU678 4.2 91.8 1.0 CD E:GLU401 4.2 107.5 1.0 OE1 E:GLU678 4.3 91.8 1.0 O3' D:DG2 4.3 105.4 1.0 CG E:GLU401 4.4 107.5 1.0 NZ E:LYS405 4.4 103.2 1.0 OP2 D:DA3 4.5 94.1 1.0 OE1 E:GLN376 4.5 112.3 1.0 O5' D:DG1 4.6 111.6 1.0 CD E:GLU678 4.6 91.8 1.0 C5' D:DG1 4.7 111.6 1.0 CE E:LYS405 4.8 103.2 1.0

J.P.K.Bravo, D.A.Ramos, R.Fregoso Ocampo, C.Ingram, D.W.Taylor. Plasmid Targeting and Destruction By the Ddmde Bacterial Defence System. Nature V. 630 961 2024.
ISSN: ESSN 1476-4687
PubMed: 38740055
DOI: 10.1038/S41586-024-07515-9