Magnesium in PDB 8u3z: Model of TTLL6 Bound to Microtubule From Composite Map

The binding sites of Magnesium atom in the Model of TTLL6 Bound to Microtubule From Composite Map (pdb code 8u3z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Model of TTLL6 Bound to Microtubule From Composite Map, PDB code: 8u3z:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Model of TTLL6 Bound to Microtubule From Composite Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Model of TTLL6 Bound to Microtubule From Composite Map within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:202.6 occ:1.00 O3G A:GTP501 2.0 165.9 1.0 O2G A:GTP501 2.2 165.9 1.0 PG A:GTP501 2.4 165.9 1.0 OE1 A:GLU71 2.5 181.9 1.0 CB A:GLU71 2.8 181.9 1.0 OD2 A:ASP69 2.8 171.5 1.0 O1G A:GTP501 2.9 165.9 1.0 OD1 A:ASP98 3.3 183.5 1.0 OD1 A:ASP69 3.3 171.5 1.0 CD A:GLU71 3.5 181.9 1.0 CG A:ASP69 3.5 171.5 1.0 CG A:GLU71 3.7 181.9 1.0 CA A:GLU71 3.9 181.9 1.0 O3B A:GTP501 3.9 165.9 1.0 N A:GLU71 4.0 181.9 1.0 CG A:ASP98 4.1 183.5 1.0 OG1 A:THR145 4.4 164.3 1.0 O A:GLU71 4.4 181.9 1.0 OD2 A:ASP98 4.6 183.5 1.0 OE2 A:GLU71 4.6 181.9 1.0 C A:GLU71 4.6 181.9 1.0 O2B A:GTP501 4.7 165.9 1.0 N A:GLN11 4.7 151.6 1.0 CB A:GLN11 4.8 151.6 1.0 PB A:GTP501 4.9 165.9 1.0 CB A:ASP98 4.9 183.5 1.0 CB A:ASP69 4.9 171.5 1.0

Magnesium binding site 2 out of 5 in the Model of TTLL6 Bound to Microtubule From Composite Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Model of TTLL6 Bound to Microtubule From Composite Map within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:158.5 occ:1.00 O3G B:G2P501 2.0 154.1 1.0 O2G B:G2P501 2.0 154.1 1.0 PG B:G2P501 2.4 154.1 1.0 O3B B:G2P501 3.5 154.1 1.0 O1G B:G2P501 3.7 154.1 1.0 OE1 B:GLN11 4.1 154.1 1.0 O2A B:G2P501 4.1 154.1 1.0 O2B B:G2P501 4.2 154.1 1.0 CB B:GLN11 4.3 154.1 1.0 OE1 B:GLU69 4.5 172.4 1.0 PB B:G2P501 4.5 154.1 1.0 CG2 B:THR72 4.6 170.0 1.0 CB B:GLU69 4.6 172.4 1.0 OG1 B:THR143 4.8 163.3 1.0 N B:GLN11 4.8 154.1 1.0 OD2 B:ASP67 4.9 173.2 1.0 CD B:GLN11 4.9 154.1 1.0 O B:GLY96 4.9 166.5 1.0 OD1 B:ASP67 5.0 173.2 1.0

Magnesium binding site 3 out of 5 in the Model of TTLL6 Bound to Microtubule From Composite Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Model of TTLL6 Bound to Microtubule From Composite Map within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:171.2 occ:1.00 O3G E:G2P501 2.0 156.1 1.0 OD1 E:ASP67 2.4 157.1 1.0 PG E:G2P501 3.0 156.1 1.0 CG E:ASP67 3.1 157.1 1.0 CB E:GLU69 3.2 154.7 1.0 O1G E:G2P501 3.3 156.1 1.0 OE1 E:GLU69 3.4 154.7 1.0 OD2 E:ASP67 3.4 157.1 1.0 O3B E:G2P501 3.7 156.1 1.0 N E:GLU69 3.8 154.7 1.0 CG2 E:THR72 3.9 154.8 1.0 CG2 E:THR143 3.9 152.9 1.0 CA E:GLU69 4.1 154.7 1.0 CD E:GLU69 4.3 154.7 1.0 CG E:GLU69 4.3 154.7 1.0 O E:GLU69 4.3 154.7 1.0 CB E:ASP67 4.4 157.1 1.0 OG1 E:THR72 4.4 154.8 1.0 O2G E:G2P501 4.4 156.1 1.0 O E:GLY96 4.6 158.8 1.0 C E:GLU69 4.7 154.7 1.0 N E:LEU68 4.7 147.2 1.0 CB E:THR72 4.8 154.8 1.0 OG1 E:THR143 4.8 152.9 1.0 CA E:GLY96 4.8 158.8 1.0 N E:GLN11 4.9 145.6 1.0 CB E:THR143 4.9 152.9 1.0 C E:LEU68 5.0 147.2 1.0

Magnesium binding site 4 out of 5 in the Model of TTLL6 Bound to Microtubule From Composite Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Model of TTLL6 Bound to Microtubule From Composite Map within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:109.0 occ:1.00 O3G F:GTP501 2.0 165.9 1.0 O2B F:GTP501 2.0 165.9 1.0 O1G F:GTP501 2.4 165.9 1.0 PG F:GTP501 2.4 165.9 1.0 PB F:GTP501 2.5 165.9 1.0 O3A F:GTP501 2.5 165.9 1.0 O3B F:GTP501 2.8 165.9 1.0 OE1 F:GLU71 2.8 172.7 1.0 O2G F:GTP501 3.9 165.9 1.0 CD F:GLU71 3.9 172.7 1.0 O1B F:GTP501 3.9 165.9 1.0 PA F:GTP501 3.9 165.9 1.0 CB F:GLN11 4.0 136.4 1.0 N F:GLN11 4.0 136.4 1.0 OG1 F:THR145 4.2 144.8 1.0 OE1 F:GLN11 4.3 136.4 1.0 NZ B:LYS252 4.3 159.0 1.0 O2A F:GTP501 4.4 165.9 1.0 OD2 F:ASP69 4.4 160.2 1.0 O1A F:GTP501 4.5 165.9 1.0 CB F:GLU71 4.6 172.7 1.0 OE2 F:GLU71 4.6 172.7 1.0 CA F:GLN11 4.6 136.4 1.0 OD1 F:ASP69 4.6 160.2 1.0 CG F:GLU71 4.9 172.7 1.0 CA F:GLY10 4.9 140.7 1.0 CE B:LYS252 4.9 159.0 1.0 C F:GLY10 5.0 140.7 1.0 CG F:ASP69 5.0 160.2 1.0

Magnesium binding site 5 out of 5 in the Model of TTLL6 Bound to Microtubule From Composite Map


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Model of TTLL6 Bound to Microtubule From Composite Map within 5.0Å range: probe atom residue distance (Å) B Occ N:Mg902 b:436.8 occ:1.00 O2A N:ATP901 2.1 394.7 1.0 O2G N:ATP901 2.4 394.7 1.0 O1B N:ATP901 2.5 394.7 1.0 OE2 N:GLU359 2.8 336.1 1.0 PB N:ATP901 3.3 394.7 1.0 PA N:ATP901 3.3 394.7 1.0 O3A N:ATP901 3.4 394.7 1.0 PG N:ATP901 3.4 394.7 1.0 CD N:GLU359 3.5 336.1 1.0 O3B N:ATP901 3.5 394.7 1.0 ND2 N:ASN264 3.6 371.6 1.0 OE1 N:GLU359 3.6 336.1 1.0 O3G N:ATP901 3.7 394.7 1.0 OD2 N:ASP346 4.0 228.4 1.0 C5' N:ATP901 4.3 394.7 1.0 O5' N:ATP901 4.3 394.7 1.0 O1A N:ATP901 4.3 394.7 1.0 CG N:ASN264 4.6 371.6 1.0 ND2 N:ASN361 4.7 288.1 1.0 CG N:GLU359 4.7 336.1 1.0 O2B N:ATP901 4.7 394.7 1.0 O1G N:ATP901 4.8 394.7 1.0 OD1 N:ASN361 4.9 288.1 1.0 O3' N:ATP901 5.0 394.7 1.0 N N:GLN180 5.0 292.6 1.0

K.K.Mahalingan, D.A.Grotjahn, Y.Li, G.C.Lander, E.A.Zehr, A.Roll-Mecak. Structural Basis For Alpha-Tubulin-Specific and Modification State-Dependent Glutamylation. Nat.Chem.Biol. 2024.
ISSN: ESSN 1552-4469
PubMed: 38658656
DOI: 10.1038/S41589-024-01599-0