Magnesium in PDB 8u47: Crystal Structure of Bacteroides Thetaiotaomicron Vpi-5482 Endoglycosidase BT1285

The structure of Crystal Structure of Bacteroides Thetaiotaomicron Vpi-5482 Endoglycosidase BT1285, PDB code: 8u47 was solved by D.E.Sastre, N.Sultana, E.J.Sundberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.97 / 1.33
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	67.8, 68.727, 51.029, 90, 90, 90
R / Rfree (%)	18 / 20.1

The binding sites of Magnesium atom in the Crystal Structure of Bacteroides Thetaiotaomicron Vpi-5482 Endoglycosidase BT1285 (pdb code 8u47). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Bacteroides Thetaiotaomicron Vpi-5482 Endoglycosidase BT1285, PDB code: 8u47:

Magnesium binding site 1 out of 1 in the Crystal Structure of Bacteroides Thetaiotaomicron Vpi-5482 Endoglycosidase BT1285


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Bacteroides Thetaiotaomicron Vpi-5482 Endoglycosidase BT1285 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:22.3 occ:1.00 O A:HOH724 2.0 26.1 1.0 O A:HOH634 2.1 30.4 1.0 O A:HOH529 2.2 23.6 1.0 O A:HOH559 2.2 23.2 1.0 O A:HOH535 3.8 33.1 1.0 O A:PRO249 4.1 15.0 1.0 O2 A:PO4402 4.1 39.1 1.0 O A:HOH551 4.1 29.4 1.0 O1 A:PO4402 4.2 27.4 1.0 O A:ALA248 4.3 17.6 1.0 C A:PRO249 4.5 16.5 1.0 CA A:SER250 4.6 15.1 1.0 N A:SER250 4.7 17.4 1.0 O A:HOH740 4.7 35.2 1.0 P A:PO4402 4.9 33.8 1.0

D.E.Sastre, N.Sultana, M.V.A.S.Navarro, M.Huliciak, J.Du, J.O.Cifuente, M.Flowers, X.Liu, P.Lollar, B.Trastoy, M.E.Guerin, E.J.Sundberg. Human Gut Microbes Express Functionally Distinct Endoglycosidases to Metabolize the Same N-Glycan Substrate Nat Commun 2024.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-024-48802-3