Magnesium in PDB 8ucu: Partial Dna Termination Subcomplex of Xenopus Laevis Dna Polymerase Alpha-Primase

All present enzymatic activity of Partial Dna Termination Subcomplex of Xenopus Laevis Dna Polymerase Alpha-Primase:
2.7.7.7;

The binding sites of Magnesium atom in the Partial Dna Termination Subcomplex of Xenopus Laevis Dna Polymerase Alpha-Primase (pdb code 8ucu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Partial Dna Termination Subcomplex of Xenopus Laevis Dna Polymerase Alpha-Primase, PDB code: 8ucu:

Magnesium binding site 1 out of 1 in the Partial Dna Termination Subcomplex of Xenopus Laevis Dna Polymerase Alpha-Primase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Partial Dna Termination Subcomplex of Xenopus Laevis Dna Polymerase Alpha-Primase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1502 b:79.3 occ:1.00 OD2 A:ASP859 1.9 69.7 1.0 OD2 A:ASP1000 2.1 73.3 1.0 O1G A:DGT1501 2.1 59.1 1.0 O2B A:DGT1501 2.2 62.4 1.0 O1A A:DGT1501 2.2 64.4 1.0 O A:PHE860 2.3 67.2 1.0 CG A:ASP859 3.0 69.5 1.0 PB A:DGT1501 3.2 58.4 1.0 CG A:ASP1000 3.3 69.9 1.0 PA A:DGT1501 3.4 65.8 1.0 PG A:DGT1501 3.4 57.3 1.0 OD1 A:ASP859 3.4 70.0 1.0 C A:PHE860 3.5 64.9 1.0 O3A A:DGT1501 3.5 57.5 1.0 O3B A:DGT1501 3.6 50.0 1.0 H5'A A:DGT1501 3.6 58.3 1.0 OD1 A:ASP1000 3.9 67.6 1.0 H A:PHE860 3.9 62.1 1.0 N A:PHE860 4.0 56.9 1.0 HA A:ASN861 4.1 59.4 1.0 H A:SER862 4.2 58.5 1.0 O3G A:DGT1501 4.2 67.0 1.0 C5' A:DGT1501 4.2 55.3 1.0 CB A:ASP859 4.3 67.4 1.0 O5' A:DGT1501 4.3 60.1 1.0 CA A:PHE860 4.3 59.1 1.0 H5' A:DGT1501 4.3 58.4 1.0 HB2 A:ASP1000 4.3 68.1 1.0 HB2 A:PHE860 4.3 62.5 1.0 HB3 A:ASP859 4.3 66.2 1.0 CB A:ASP1000 4.4 70.6 1.0 H A:LEU863 4.4 57.6 1.0 N A:ASN861 4.5 62.5 1.0 C A:ASP859 4.5 61.0 1.0 O2A A:DGT1501 4.5 60.3 1.0 HB2 A:LEU863 4.6 57.0 1.0 O1B A:DGT1501 4.6 64.9 1.0 O2G A:DGT1501 4.6 52.0 1.0 HB3 A:ASP1000 4.6 68.8 1.0 N A:SER862 4.7 55.2 1.0 CA A:ASN861 4.7 55.5 1.0 CB A:PHE860 4.7 65.0 1.0 HB3 A:PHE860 4.8 62.3 1.0 CA A:ASP859 4.9 60.8 1.0 HA A:ASP859 4.9 65.4 1.0 HB2 A:ASP859 5.0 65.9 1.0

E.A.Mullins, L.E.Salay, C.L.Durie, N.P.Bradley, J.E.Jackman, M.D.Ohi, W.J.Chazin, B.F.Eichman. A Mechanistic Model of Primer Synthesis From Catalytic Structures of Dna Polymerase Alpha-Primase. Biorxiv 2023.
ISSN: ISSN 2692-8205
PubMed: 36993335
DOI: 10.1101/2023.03.16.533013