Magnesium in PDB 8uhg: Structure of Paused Transcription Complex Pol II-Dsif-Nelf - Poised Post-Translocated

All present enzymatic activity of Structure of Paused Transcription Complex Pol II-Dsif-Nelf - Poised Post-Translocated:
2.7.7.6;

The structure of Structure of Paused Transcription Complex Pol II-Dsif-Nelf - Poised Post-Translocated also contains other interesting chemical elements:

Zinc

(Zn)

8 atoms

The binding sites of Magnesium atom in the Structure of Paused Transcription Complex Pol II-Dsif-Nelf - Poised Post-Translocated (pdb code 8uhg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Paused Transcription Complex Pol II-Dsif-Nelf - Poised Post-Translocated, PDB code: 8uhg:

Magnesium binding site 1 out of 1 in the Structure of Paused Transcription Complex Pol II-Dsif-Nelf - Poised Post-Translocated


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Paused Transcription Complex Pol II-Dsif-Nelf - Poised Post-Translocated within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2003 b:30.0 occ:1.00 O3' P:C17 1.8 94.5 1.0 OD1 A:ASP499 2.0 106.7 1.0 OD1 A:ASP495 2.1 110.7 1.0 OD1 A:ASP497 2.2 113.2 1.0 OD2 A:ASP497 2.5 113.2 1.0 CG A:ASP497 2.7 113.2 1.0 CG A:ASP499 2.9 106.7 1.0 H4' P:C17 2.9 94.5 1.0 C3' P:C17 3.0 94.5 1.0 CG A:ASP495 3.0 110.7 1.0 OD2 A:ASP499 3.1 106.7 1.0 OD2 A:ASP495 3.3 110.7 1.0 C4' P:C17 3.4 94.5 1.0 O2' P:C17 3.4 94.5 1.0 HO2' P:C17 3.6 94.5 1.0 H5'' P:C17 3.7 94.5 1.0 H3' P:C17 3.7 94.5 1.0 O A:ASP495 3.8 110.7 1.0 C2' P:C17 3.8 94.5 1.0 H A:ASP495 3.9 110.7 1.0 H A:ASP497 4.0 113.2 1.0 C5' P:C17 4.1 94.5 1.0 HH21 A:ARG460 4.2 103.6 1.0 H A:ASP499 4.2 106.7 1.0 CB A:ASP497 4.2 113.2 1.0 CB A:ASP499 4.3 106.7 1.0 H2' P:C17 4.4 94.5 1.0 CB A:ASP495 4.4 110.7 1.0 C A:ASP495 4.5 110.7 1.0 N A:ASP499 4.5 106.7 1.0 N A:ASP495 4.6 110.7 1.0 HB3 A:ASP497 4.6 113.2 1.0 HB2 A:ASP499 4.6 106.7 1.0 O4' P:C17 4.7 94.5 1.0 HA A:ASP499 4.7 106.7 1.0 HB2 A:ASP497 4.7 113.2 1.0 H5' P:C17 4.7 94.5 1.0 N A:ASP497 4.7 113.2 1.0 CA A:ASP495 4.8 110.7 1.0 CA A:ASP499 4.8 106.7 1.0 CA A:ASP497 4.9 113.2 1.0 C1' P:C17 4.9 94.5 1.0 HB3 A:ASP499 4.9 106.7 1.0 NH2 A:ARG460 4.9 103.6 1.0 HB3 A:ASP495 4.9 110.7 1.0 HB2 A:ASP495 4.9 110.7 1.0

B.G.Su, S.M.Vos. Distinct Negative Elongation Factor Conformations Regulate Rna Polymerase II Promoter-Proximal Pausing. Mol.Cell 2024.
ISSN: ISSN 1097-2765
PubMed: 38401543
DOI: 10.1016/J.MOLCEL.2024.01.023